GT5602

CSHL Arabidopsis genetrap mutant lines

Original: GT5602

Phenotypes

Morphological phenotypes

Original description

  • seedling lethal: small cotyledons, reduced hypocotyl, very little root growth
Anatomical entity
/structure development stage		 Phenotypes
cotyledon (PO:0020030)
  • decreased size (PATO:0000587)
hypocotyl (PO:0020100)
  • decreased length (PATO:0000574)
root (PO:0009005)
  • present in fewer numbers in organism (PATO:0001997)
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT5602

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10125802 [Map]; Strand: c
      • AT4G18320.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT4G18320.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon2 (CDS)
      • AT4G18330.1 - [+] show detail - Translation elongation factor EF1A/initiation factor IF2gamma family protein
        Distance: -777; Region: promoter
      • AT4G18330.2 - [+] show detail - Translation elongation factor EF1A/initiation factor IF2gamma family protein
        Distance: -777; Region: promoter
    Flanking Genome Sequence: GT5602 - 3-prime edge 
    CCGACCGTTA CCGACCGTTT TCATCCCTAA AGAGAATGAT ACCATCGAAT 
    GGAATCCTTT CCACGGCCAA TCTTTTGATC AGATCAAACA TCGACTTCAG 
    ATATTTCCAC AAACTCTAGA CATTATCGGC ACTAAAACTG ATCGCGAGAG 
    AGTGAAAAAC CGCACTTGGG GTGCTAACAA CCAAATCGTT TCTTACACTG 
    ACGGAGTTTG GGTTGAGGTT CGCGCTTAGC CTAATGTTCT ACCACTTGAC 
    TCTTTAAGTT ATTTCTCTGT GATTGTTTTC GTTATCTATC TTTTATTTGT 
    GTGGTTTAAG ATTTTTAGTA TTAATTTCTA TTTATTGTGT TGCAAACTCT 
    ACTCATTGTG GTTTCGTTAG AAACTCTACT TTGGTTTGTT TATAAAAATG 
    CTGATCTTTT ATTGTTTATT TTTACGTTAA ACTTAATAGA CAAACAAAGA 
    ACTCTTAATT CGGTGTACAT CTCTTCGTTA ATATATGTAA AACATATTTT 
    TTTTTTAAAA ATTGTTTAGC AAAAATTAAA ATGAAAAATT CTACAAAAAA 
    TTTTCCCTTA TTTGGCCCCC CTACAAAAAA AA

AT4G18320.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G18320.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18310.1); Has 37 Blast hits to 37 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G18330.1

Model type
Protein coding
Short Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein
Computational Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 gamma subunit (TAIR:AT1G04170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G18330.2

Model type
Protein coding
Short Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein
Computational Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 gamma subunit (TAIR:AT1G04170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR