GT5680

CSHL Arabidopsis genetrap mutant lines

Original: GT5680

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT5680

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17452302 [Map]; Strand: w
      • AT5G43420.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT5680 - 3-prime edge 
    GTTACCGACC GTTTTCATCC CTAGTTCTAC ACAAAGGACA ATTGGCGTTG 
    TTCTGAAGCC ACACATCGAT ACAGTCGATA TGAAACAAAT GAGAACAATT 
    TGGGATAATC CTCAGCTTCT CCTCATCTGG GAACTCACTC AAACAAACAG 
    AGCATTCTTG AGATCTCTTC TCTTCTTCTT GTTCTACGAC TACTGTAAAA 
    ACGCCGTCGT TTTGGTCGTA TCTCTTCTTG AACTTAAAGA TTGGGATTGC 
    TCTAATGACG GATTCATCAA CACCGCGGCT TCTAAGCTCT GGAGAGTAAA 
    CCATTAAAGG ATCTTGGTCG TTGCGTCGCC TTCGAGATAA CGAGAATCGA 
    CCAAGAATGT CGATTCGGTG CCAGTTGAGA CAACATTTGA TAACAAAAAC 
    ATAATAGCTT ACAAGTACAA ATGCTGTGGC TAAGATTCCG ATCACCGCGA 
    CGGCTAATAT CGGAAAACTC GTCCCCGTAG AGCTCGCACG GTGGAAAATA 
    TGTGGCGGCG GC

AT5G43420.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G04360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR