GT5688

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT5688

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 6775354 [Map]; Strand: c
- AT5G20050.1 - [+] show detail - Protein kinase superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G20060.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: -813; Region: promoter
- AT5G20060.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: -882; Region: promoter
- AT5G20060.3 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: -921; Region: promoter

CCTACGAGAA GCATTTCAAG GGTAGAAGTT AAGGAAACAA AAAAGAAGAA 
GTTAGAGTAT TTCCCAAGGA TTGTGAACCA AAAGATGAGA GAAAGAAAGA 
TAATGGAGAT TGTTGATCAA AGGCTGATTG AAGTTAATGA GGTAGATGAA 
GAGGAAGTGA TGAAATTGGT GTGTGTGGCT TTGTGGTGTA TACAAGAGAA 
GTCTAAGAAA AGGCCTGATA TGACTATGGT TATTGAGATG CTTGAAGGGA 
GAGTTCCGGT GAACGAGCCA CCGGATTCAG ATGTTGTTGT GGTCGATCTT 
TTGGCGGCTG ATGATGATGA TGCAAGTACC GGTGTTCGAC GGGTAGTAAA 
TATCCCGAAA TTGCAAATCC ATAGGGAGAG GAATTTTCGT TTATCATCCA 
TTTGCTCTAG TATCATATCT CCCATCTCTC CACGCTAGTT TTTTTTGTGT 
GTTCATATTG GTT

5 prime edge [+] show sequence

Chromosome: 5; Position: 6774932 [Map]; Strand: c
- AT5G20050.1 - [+] show detail - Protein kinase superfamily protein
  Distance: 0; Region: exon1 (CDS)

TCCCAAGACA AGCATCCTCC TCTGGATCTT CCTCTGTTTC CTCTCTCCCC 
ACAAATCCAG ATATCGAGAG ACGAGTTTAC GATATAATCG TAAACTAGGA 
ATCTCGGACG ATTCGCGCTA GTCGAAGACG AATAACCGTA AAGACGAACT 
AGATTCTTGT GCTGAACGGA AGCTATGGCA GCTACTTCGG ATCTGAACTC 
TCTTTCTCCT TTCTCTTCTC CTTCGATTCT CTTCACTGCT ACTTGGCTTC 
CGTCTTTCAA AACTCCTTTA AACACCGAAC CGGAACCGCC TTTCCCGATC 
AAAGATCTGA ATCCATCCGT GGCTTCTTCA AGATCTTCG

AT5G20050.1

Model type: Protein coding
Short Description: Protein kinase superfamily protein
Computational Description: Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-domain-2 5 (TAIR:AT4G32300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G20060.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G52700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G20060.2

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G52700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G20060.3

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G52700.1); Has 2121 Blast hits to 2107 proteins in 636 species: Archae - 4; Bacteria - 835; Metazoa - 351; Fungi - 284; Plants - 201; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Link: InterPro Scan - TAIR