GT576

CSHL Arabidopsis genetrap mutant lines

Original: GT576

Phenotypes

Morphological phenotypes

Original description

  • tiny, dark green seedlings
  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
seedling (PO:0008037)
  • decreased size (PATO:0000587)
  • dark green (PATO:0001249)
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT576

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14921538 [Map]; Strand: c
      • AT2G35520.1 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G35520.2 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT576 - 3-prime edge 
    ACCGTTACCC CCCGTTTTCA TCCCTGCTCG TGAAGAAGAG AAAAAGAAGA 
    AGCAGGAGAA AAGTTTGCTA GCTGAGCCTG TGTTGGTCAG TCTTTGAAGA 
    AATGGTGAAA TCGACTAGTA AGGATGCTCA GGATCTCTTC CATTCTCTTC 
    ACTCTGCTTA TACCGCTACA CCAACGAATC TCAAGGTCCA CCATTATCAT 
    TTTGTTCTGA TCTTTTATGA ATCATCATTG AAATTGAAAA ATCCGCTGAA 
    TGTTCTTGTT TGAACTCTGT TTTTGTAGAT CATCGACCTT TATGTTTGTT 
    TCGCGGTCTT CACAGCTTTG ATTCAGGTAC TCTAATCTCC TTTATTGCTT 
    CGACTGTGCC TCTCGATCCG TGCCTTTTCG TTTCGTTTAT GTATATGGGG 
    ATTTCAAATG TATGAGTTTT TATGTTCATA TGTATTGATA TGTGTATTTT 
    CAAATAGAAA GACACTCAAA TTTGATATAC TTGATTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14921535 [Map]; Strand: c
      • AT2G35520.1 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G35520.2 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT576 - 3-prime edge 
    CCGACCGTTA CCGACCGTTT TCATCCCTGC TCGTGAAGAA GAGAAAAAGA 
    AGAAGCAGGA GAAAAGTTTG CTTGCTGTGC CTGTGTTGGT CAGTCTTTGA 
    AGAAATGGTG AAATCGACTA GTAAGGATGC TCAGGATCTC TTCCATTCTC 
    TTCACTCTGC TTATACCGCT ACACCAACGA ATCTCAAGGT CCACCATTAT 
    CATTTTGTTC TGATCTTTTA TGAATCATCA TTGAAATTGA AAAATCCGCT 
    GAATGTTCTT GTTTGAACTC TGTTTTTGTA GATCATCGAC CTTTATGTTT 
    GTTTCGCGGT CTTCACAGCT TTGATTCAGG TACTCTAATC TCCTTTATTG 
    CTTCGACTGT GCCTCTCGAT CCGTGCCTTT TCGTTTCGTT TATGTATATG 
    GGGATTTCAA ATGTATGAGT TTTTATGTTC ATATGTATTG ATATGTGTAT 
    TTTCAAATAG AAAGACACTC AAATTTGATA TACTTGATTT GCAATTTTTG 
    TGTTCATTTG TATAGCATCA TCCATTACTT TGTCGTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5184996 [Map]; Strand: c
      • AT5G15870.1 - [+] show detail - glycosyl hydrolase family 81 protein
        Distance: -118; Region: promoter
      • AT5G15880.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -782; Region: promoter
    Flanking Genome Sequence: GT576 - 5-prime edge 
    GTCTACGTTT TAGCATCTAG CAAGTCTCCT GCACGTTCCC AAAACCTTAA 
    CTTGTAAACC ATCTTTTATT ATATATTTAC AAAATTTCCC TATCATTTTT 
    CTTTCTAACC AAACAAACCC CACAATTTTG CTTTTTGTGA ACCCAATTTC 
    CAAATCCGTC GTTATCTCTT CTCCTCTTGA CTAAGCAAAA TGTTGAAAAA 
    AGTGAGGCGA AAAGTCAAAG TCTTAATCAC CAAACCCTTT AAAAAGCCCA 
    AGAACAGACC TCCATCACCA CCACCACCTC TTCCTCTTCC TCCTTCACCA 
    TCTCCACCAC CGTCTCAACA AATGTCTTCC TCAAGACAAA AAAACATTCC 
    GTTTCTCTTC CCAAGATCCG ATTCCTCTGT TCTACCCGAC CCGTCTCGTT 
    TCTTCAGCCA CGATCTCCTC TCATCTCCTC TCCCTACAAA CTCTTTCTTC 
    CAAAACTTCA CTCTCAACAA TGGCGACCAA GCTGAGTACT TTCATCCTTA 
    CATCATCAAA CCCTCGACTT CATCTCTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5184994 [Map]; Strand: c
      • AT5G15870.1 - [+] show detail - glycosyl hydrolase family 81 protein
        Distance: -116; Region: promoter
      • AT5G15880.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -784; Region: promoter
    Flanking Genome Sequence: GT576 - 5-prime edge 
    CTACGTTTTA GCATCTAGCA AGTCTCCTGC ACGTTCCCAA AACCTTAACT 
    TGTAAACCAT CTTTTATTAT ATATTTACAA AATTTCCCTA TCATTTTTCT 
    TTCTAACCAA ACAAACCCCA CAATTTTGCT TTTTGTGAAC CCAATTTCCA 
    AATCCGTCGT TATCTCTTCT CCTCTTGAAC TAAGCAAAAT GTTGAAAAAA 
    GTGAGGCGAA AAGTCAAAGT CTTAATCACC AAACCCTTTA AAAAGCCCAA 
    GATAAGACCT CCATCACCAC CACCACCTCT TCCTCTTCCT CCTTCACCAT 
    CTCCACCACC GTCTCAACAA ATGTTCTTCC TCAAGAAAAA AAAACATTCC 
    GTTTCTCTTC CCAAGAATCC GATTCCTCTG TTCTACCCGA CCCGTCTCGT 
    TTCTTCAGCC ACGAATCTCC TCTCATCTCC TCTCCCTACA AACTCTTTCT 
    TCCAAAACTT CACTCTCAAC AATGGCGAAC CAAGCTGAGT ACTTTCATCC 
    TTACATC

AT2G35520.1

Model type
Protein coding
Short Description
Defender against death (DAD family) protein
Computational Description
DEFENDER AGAINST CELL DEATH 2 (DAD2); CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: Defender against death (DAD family) protein (TAIR:AT1G32210.1); Has 458 Blast hits to 458 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 115; Plants - 102; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35520.2

Model type
Protein coding
Short Description
Defender against death (DAD family) protein
Computational Description
DEFENDER AGAINST CELL DEATH 2 (DAD2); CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: Defender against death (DAD family) protein (TAIR:AT1G32210.1); Has 458 Blast hits to 458 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 115; Plants - 102; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15870.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 81 protein
Computational Description
glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT1G18310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15880.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR