GT576

CSHL Arabidopsis genetrap mutant lines

Original: GT576

Phenotypes

Morphological phenotypes

Original description

  • tiny, dark green seedlings
  • tiny plants
Anatomical entity
/structure development stage
Phenotypes
seedling (PO:0008037)
  • decreased size (PATO:0000587)
  • dark green (PATO:0001249)
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT576

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14921538 [Map]; Strand: c
      • AT2G35520.1 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G35520.2 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT576 - 3-prime edge
    ACCGTTACCC CCCGTTTTCA TCCCTGCTCG TGAAGAAGAG AAAAAGAAGA 
    AGCAGGAGAA AAGTTTGCTA GCTGAGCCTG TGTTGGTCAG TCTTTGAAGA
    AATGGTGAAA TCGACTAGTA AGGATGCTCA GGATCTCTTC CATTCTCTTC
    ACTCTGCTTA TACCGCTACA CCAACGAATC TCAAGGTCCA CCATTATCAT
    TTTGTTCTGA TCTTTTATGA ATCATCATTG AAATTGAAAA ATCCGCTGAA
    TGTTCTTGTT TGAACTCTGT TTTTGTAGAT CATCGACCTT TATGTTTGTT
    TCGCGGTCTT CACAGCTTTG ATTCAGGTAC TCTAATCTCC TTTATTGCTT
    CGACTGTGCC TCTCGATCCG TGCCTTTTCG TTTCGTTTAT GTATATGGGG
    ATTTCAAATG TATGAGTTTT TATGTTCATA TGTATTGATA TGTGTATTTT
    CAAATAGAAA GACACTCAAA TTTGATATAC TTGATTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14921535 [Map]; Strand: c
      • AT2G35520.1 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G35520.2 - [+] show detail - Defender against death (DAD family) protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT576 - 3-prime edge
    CCGACCGTTA CCGACCGTTT TCATCCCTGC TCGTGAAGAA GAGAAAAAGA 
    AGAAGCAGGA GAAAAGTTTG CTTGCTGTGC CTGTGTTGGT CAGTCTTTGA
    AGAAATGGTG AAATCGACTA GTAAGGATGC TCAGGATCTC TTCCATTCTC
    TTCACTCTGC TTATACCGCT ACACCAACGA ATCTCAAGGT CCACCATTAT
    CATTTTGTTC TGATCTTTTA TGAATCATCA TTGAAATTGA AAAATCCGCT
    GAATGTTCTT GTTTGAACTC TGTTTTTGTA GATCATCGAC CTTTATGTTT
    GTTTCGCGGT CTTCACAGCT TTGATTCAGG TACTCTAATC TCCTTTATTG
    CTTCGACTGT GCCTCTCGAT CCGTGCCTTT TCGTTTCGTT TATGTATATG
    GGGATTTCAA ATGTATGAGT TTTTATGTTC ATATGTATTG ATATGTGTAT
    TTTCAAATAG AAAGACACTC AAATTTGATA TACTTGATTT GCAATTTTTG
    TGTTCATTTG TATAGCATCA TCCATTACTT TGTCGTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5184996 [Map]; Strand: c
      • AT5G15870.1 - [+] show detail - glycosyl hydrolase family 81 protein
        Distance: -118; Region: promoter
      • AT5G15880.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -782; Region: promoter
    Flanking Genome Sequence: GT576 - 5-prime edge
    GTCTACGTTT TAGCATCTAG CAAGTCTCCT GCACGTTCCC AAAACCTTAA 
    CTTGTAAACC ATCTTTTATT ATATATTTAC AAAATTTCCC TATCATTTTT
    CTTTCTAACC AAACAAACCC CACAATTTTG CTTTTTGTGA ACCCAATTTC
    CAAATCCGTC GTTATCTCTT CTCCTCTTGA CTAAGCAAAA TGTTGAAAAA
    AGTGAGGCGA AAAGTCAAAG TCTTAATCAC CAAACCCTTT AAAAAGCCCA
    AGAACAGACC TCCATCACCA CCACCACCTC TTCCTCTTCC TCCTTCACCA
    TCTCCACCAC CGTCTCAACA AATGTCTTCC TCAAGACAAA AAAACATTCC
    GTTTCTCTTC CCAAGATCCG ATTCCTCTGT TCTACCCGAC CCGTCTCGTT
    TCTTCAGCCA CGATCTCCTC TCATCTCCTC TCCCTACAAA CTCTTTCTTC
    CAAAACTTCA CTCTCAACAA TGGCGACCAA GCTGAGTACT TTCATCCTTA
    CATCATCAAA CCCTCGACTT CATCTCTCTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5184994 [Map]; Strand: c
      • AT5G15870.1 - [+] show detail - glycosyl hydrolase family 81 protein
        Distance: -116; Region: promoter
      • AT5G15880.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -784; Region: promoter
    Flanking Genome Sequence: GT576 - 5-prime edge
    CTACGTTTTA GCATCTAGCA AGTCTCCTGC ACGTTCCCAA AACCTTAACT 
    TGTAAACCAT CTTTTATTAT ATATTTACAA AATTTCCCTA TCATTTTTCT
    TTCTAACCAA ACAAACCCCA CAATTTTGCT TTTTGTGAAC CCAATTTCCA
    AATCCGTCGT TATCTCTTCT CCTCTTGAAC TAAGCAAAAT GTTGAAAAAA
    GTGAGGCGAA AAGTCAAAGT CTTAATCACC AAACCCTTTA AAAAGCCCAA
    GATAAGACCT CCATCACCAC CACCACCTCT TCCTCTTCCT CCTTCACCAT
    CTCCACCACC GTCTCAACAA ATGTTCTTCC TCAAGAAAAA AAAACATTCC
    GTTTCTCTTC CCAAGAATCC GATTCCTCTG TTCTACCCGA CCCGTCTCGT
    TTCTTCAGCC ACGAATCTCC TCTCATCTCC TCTCCCTACA AACTCTTTCT
    TCCAAAACTT CACTCTCAAC AATGGCGAAC CAAGCTGAGT ACTTTCATCC
    TTACATC

AT2G35520.1

Model type
Protein coding
Short Description
Defender against death (DAD family) protein
Computational Description
DEFENDER AGAINST CELL DEATH 2 (DAD2); CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: Defender against death (DAD family) protein (TAIR:AT1G32210.1); Has 458 Blast hits to 458 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 115; Plants - 102; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35520.2

Model type
Protein coding
Short Description
Defender against death (DAD family) protein
Computational Description
DEFENDER AGAINST CELL DEATH 2 (DAD2); CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: Defender against death (DAD family) protein (TAIR:AT1G32210.1); Has 458 Blast hits to 458 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 115; Plants - 102; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15870.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 81 protein
Computational Description
glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT1G18310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15880.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR