GT5847

CSHL Arabidopsis genetrap mutant lines

Original: GT5847

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT5847

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11092524 [Map]; Strand: w
      • AT4G20670.1 - [+] show detail - Domain of unknown function (DUF26)
        Distance: -15; Region: promoter
    Flanking Genome Sequence: GT5847 - 3-prime edge 
    TGAGATATCT GATATTTCTG GTGTGTGTGT TTTTTCATTA TATGAATCGT 
    TAAGGAGTTG GAATCTTTAT ATAGGGGAGA CTCAAGCGAT TGCTATTGGT 
    CTAAAGTGAA GTTCATCTTT TTTATAAAAA AATTGGTAAT ATTACAATTA 
    CTGGAAGTTG TCAGGTTGTG GTCACACAGA ACAAAATTCG ATTGATCATC 
    TCATTTTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2706057 [Map]; Strand: c
      • AT3G08885.1 - [+] show detail - pseudogene, ferritin, similar to ferritin GB:S71265 (Arabidopsis thaliana); b...
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G08890.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -575; Region: promoter
      • AT3G08890.2 - [+] show detail - Protein of unknown function, DUF538
        Distance: -579; Region: promoter
    Flanking Genome Sequence: GT5847 - 5-prime edge 
    AGCANAAACG CTGGCTCGAT GAGCGGAGTC ATATTCGAGC CGTTCGAGGA 
    GGTAAAGAGA GCTTATCTAG CCATACCAAT CACCGCTCTT GTCTCCGTCG 
    CTCGCCAAAG ATACGCACAA GCTTGTGAGG CAGCTGTTAA CGAGCAAATC 
    AAGTAAGCAT CATCCAACTT ATTAGCTATC AAGACAAAAT AAAAAACAAC 
    ACTTCTACAT ACAAGTTATC ATAGTTAGCA AAGAAAAAGA TAGTTGAATC 
    TAGTAATAAT TTTGTATTTT GTAAGTTGTA ACTAGAAAAT ACTCATGTTT 
    CACTAATTTG ATGGCACTAA GTCACACCAT TGTTATTTTC TTAATCTTAC 
    CTCCAAATAT TGCCATCTAC CTAATTCACC TTCGATTTTG TAACATGTTG 
    GTTGTGCAGT GGTTGAGTAC AATGTCTCGT ACGTGTACCA TGCCATGTAT 
    GCGTATTTCG ACAGAGAAGA CATAACTCTT AAGGGTTTAG CCAAGTATTT 
    ATCGTTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2705986 [Map]; Strand: c
      • AT3G08885.1 - [+] show detail - pseudogene, ferritin, similar to ferritin GB:S71265 (Arabidopsis thaliana); b...
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G08890.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -646; Region: promoter
      • AT3G08890.2 - [+] show detail - Protein of unknown function, DUF538
        Distance: -650; Region: promoter
    Flanking Genome Sequence: GT5847 - 5-prime edge 
    CATACCAATC ACCGCTCTTG TGTCCGTGGC TCGCCAAAGA TACGCACAAG 
    CTTGTGAGGC GGCTGTTAAC GAGCAAATCA AGTAAGCATC ATCCAACTTA 
    TTAGCTATCA AGACAAAATA AAAAACAACA CTTGTGCATA CAAGTTATCA 
    TAGTTAGCAA AGAAAAAGAT AGTTGAATCT AGTAATAATT TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18857169 [Map]; Strand: w
      • AT5G46500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-N...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT5847 - 5-prime edge 
    CCTACTTTCT CCCTGATAGT ATGTTGATAT TGAAGAATGG GGTATACGAC 
    TCTTAGAGGA GGACTGTTCA TCAGCGGAGA CTCGACTTAA TAATCCAAAC 
    AGTACTCTTC CACATGTTTC TGAAGCCGAA GAAGGCAATA TGGGGTATAA 
    TAGACCTCTT CAAGGACTTG TTAATGAGAT TGAACACAGT GGAGAGTCTG 
    TAGATAACAA TGTAGAGACT GAGAGAAGCA CGAAGCGCAT GCGGGTAAGC 
    ATTAAGCATT AATTGAACAT AATGACT

AT3G08885.1

Model type
Pseudogene
Computational Description
pseudogene, ferritin, similar to ferritin GB:S71265 (Arabidopsis thaliana); blastp match of 48% identity and 2.0e-29 P-value to SP|Q96540|FRI1_BRANA Ferritin 1, chloroplast precursor. (Rape) {Brassica napus}
Link
InterPro Scan - TAIR

AT3G08890.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G08890.2

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20670.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF26)
Computational Description
Domain of unknown function (DUF26); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 1465 Blast hits to 1431 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1465; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46500.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR