GT5851

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT5851

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 6398643 [Map]; Strand: w
- AT3G18580.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: -453; Region: promoter
- AT3G18590.1 - [+] show detail - early nodulin-like protein 5
  Distance: -27; Region: promoter

TACCGACCGT TACCGACCGT TTTCATCCCT AGTTTTTTTG GATTGATATG 
AAGGAAGCTC TAACCAAAGT TACAGAGATT GTTTTTTTTT TAGGGTTCGT 
AATGACTTGG GACTTGGGAG GTTTTGAGTT TAAAAAAAGT GAGACTTGGA 
AATTTGTTAA AGTTGACCAC TTTTTGAGGG ATATTAATGG ATATCTCTTT 
GACTTGGTAT TTTAATTGGT GGAATCAAAA AGATATTTTG TCGAAAACAA 
CATGACTTGA AGTTGTTAAG GAATATCAAA ATTTGGGGGA TATTTTTGCT 
TGTTATTTTG AATTACAAAA TTTATGTAGA CGATGTGTTT TCCAAAAAAA 
TTGTTAAATG CTTATTAACG GATACATAGG ACTATGAGTG GTTTTTTTGG 
GGACGACAAA AGCAAATT

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 6398637 [Map]; Strand: w
  - AT3G18580.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
    Distance: -447; Region: promoter
  - AT3G18590.1 - [+] show detail - early nodulin-like protein 5
    Distance: -33; Region: promoter
Flanking Genome Sequence: GT5851 - 3-prime edge
```
CCGTTACCGA CCCTTTTCAT CCCTACTTTT TTTGGATTGA TATGAACGAA 
GCTCTAACCA AAGTTACAGA GAT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 6398646 [Map]; Strand: w
- AT3G18580.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: -456; Region: promoter
- AT3G18590.1 - [+] show detail - early nodulin-like protein 5
  Distance: -24; Region: promoter

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTTTT TTGGATTGAT 
ATGAAGGAAG CTCTAACCAA AGTTACAGAG ATTGTTTTTT TTTAAGGGGT 
CGAAATGACT TGGGACTTGG GAGGTTTTGA GTTTAAAAAG AGGGAGACTT 
GGAAATTTGT TAAAGTTGAC CACTTTTTGG GGGATATTAA GGGATATCTC 
TTTGACTTGG AATTTAAATT TCTGGAACCA AAAAAATATT TTGCCGAAAA 
CAACTTGACT TGAAGTTGTT AAGGAATATC AAAATTTGGG GGAAATTTTT 
GCTGGTTTTT TTGAATTACA AAATTTATGT AGACGAGGGG TATTCCAAAA 
AAATTGTTAA

5 prime edge [+] show sequence

Chromosome: 3; Position: 6398762 [Map]; Strand: w
- AT3G18580.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: -572; Region: promoter
- AT3G18590.1 - [+] show detail - early nodulin-like protein 5
  Distance: 0; Region: exon1 (CDS)

ATTATCGTTA TGTTTCTTGT AACATTTTAC ATGGGTTCAT GTGTTTCAAG 
CACTGAATTT GAAGTTGGAG GAGAAAATGG GTGGATCGTA CCAAAATCTA 
AGACTCTTGG AGATGCGTTT AACCAATGGG CGTGAGATAA CCGGTTTAAA 
GTTGGTGACA CTCTCCGTAA GTAATTAAGT GTATGGGGAC ACTTTTGTAT 
GAAGTTTAAA CGTTTCATCT TGTAAGATAA TAAGATATAT TAACTCTTTT 
GTGCGGTTTT TGGTGAAGGT TTCAAGTACA CGAAAGACTC AGTGTTAGTG 
GTGTCAGAAG AAGAGTACAA GAAATGCAAA GCGACCAAAC CACAACTCTA 
CTCAAACAAC GAAGACACTG TTTTCAAACT AGACCGACCC GGTTTGTTTT 
ACTTCATCAG CGGTGTCTCT GGCCACTGCG AAAAGGGTCA GAAGATGATC 
GTAAAAGTTA TGGAGACGGA GTCTTCTACA GAGTCTCCTC CTCCATCCTC 
TTC

5 prime edge [+] show sequence

Chromosome: 3; Position: 20807923 [Map]; Strand: w
- AT3G56070.1 - [+] show detail - rotamase cyclophilin 2
  Distance: 0; Region: intron1 (5UTR)
- AT3G56070.2 - [+] show detail - rotamase cyclophilin 2
  Distance: 0; Region: intron1 (5UTR)

CTTTATCCCT GGGTTTTAGG AATTGCACAA ATATTGAGCT CGCAGGCGTT 
TTTTATTATA CGTTATCTGC AAGCCTTCGA TATGTGCTTT TAACGCGATA 
AAACGCAAAA TCGAAGAAAT AGAGAAGCAA AAATCATCGA AAACATGAAT 
TGGGTTCACC GAAATGAAGT ACCTTTGCAG AGGCAATCTC AAATTCGTCT 
TCTCAAGGAG CGAGTGAAGG ATTTATATAA CGGCTCAATG GCACAAGGGC 
TTTGGGGGCT AGGGTTTTAC TAGGGCTTTT GATTGTTTGA GTTGAGACAG 
AGAGATCTGT TTTCTCGGTT TTGCCCTTTT TTATTTTTTT ACCGTCACAG 
TCTCATCAAA AAGCCCATAT GATTCAGGCC CATTATTAAA ACTACCATCC 
AAGAAATATA ATCGTTTCGT TGGACTTGGA CCCAACAACA AACCCCATTT 
CACATTGGTT CGTGTGAGCT AATTAAAGCT TTAATAAGCT ATCTAATTTC 
AATCTCGTGT TGCTATCTTA ATAAGCTCTT TAACAACATA AATCTCAATG 
TTTTGAGATT GCTTTCAAGT

AT3G18580.1

Model type: Protein coding
Short Description: Nucleic acid-binding, OB-fold-like protein
Computational Description: Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: mitochondrially targeted single-stranded DNA binding protein (TAIR:AT4G11060.1); Has 3646 Blast hits to 3646 proteins in 1001 species: Archae - 0; Bacteria - 2307; Metazoa - 115; Fungi - 0; Plants - 68; Viruses - 24; Other Eukaryotes - 1132 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G18590.1

Model type: Protein coding
Short Description: early nodulin-like protein 5
Computational Description: early nodulin-like protein 5 (ENODL5); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 6 (TAIR:AT1G48940.1); Has 1372 Blast hits to 1325 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1369; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G56070.1

Model type: Protein coding
Short Description: rotamase cyclophilin 2
Curator Summary: rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.
Computational Description: rotamase cyclophilin 2 (ROC2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, cyclosporin A binding; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16518 Blast hits to 16486 proteins in 2631 species: Archae - 108; Bacteria - 6748; Metazoa - 2914; Fungi - 1377; Plants - 1262; Viruses - 4; Other Eukaryotes - 4105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G56070.2

Model type: Protein coding
Short Description: rotamase cyclophilin 2
Curator Summary: rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.
Computational Description: rotamase cyclophilin 2 (ROC2); CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16518 Blast hits to 16486 proteins in 2631 species: Archae - 108; Bacteria - 6748; Metazoa - 2914; Fungi - 1377; Plants - 1262; Viruses - 4; Other Eukaryotes - 4105 (source: NCBI BLink).
Link: InterPro Scan - TAIR