GT5886

CSHL Arabidopsis genetrap mutant lines

Original: GT5886

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT5886

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17360699 [Map]; Strand: w
      • AT1G47350.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G47360.1 - [+] show detail - transposable element gene
        Distance: -571; Region: promoter
    Flanking Genome Sequence: GT5886 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATAACAA GTTGCAAAAT 
    CTGAGACATG AAACACGGTC TGTGGAAGAA TATGCTGAAG AATTCTACCT 
    ACTACTCACG TTTAATGACA TCAATGATAG TCAGACACAA CTTGTTTCAA 
    GATTGATCGG TGAATTACGC TCTCAGTTAC AAAATTCTTT GTCACAATTC 
    GACCCTACAA CCGTCTCGGA GGCTCACAGG CGAGCAGCTT CTTTTGAGAA 
    ACAAATGAGG TCAGCCTCAT GGAACTTTAC TAACACTCGT CCTCGTTCAC 
    TAGAGCAGCA AACACCTCCA ACGAATATTG CTTCTCGTGA AGGGGATGAG 
    CAAATCAAAA TAGTGACCCG TAATACGAAT GACGAACAAG GTTTGCGTCG 
    ATCAGCAAGG ACAGAAAACG GTACAATAAA AAAATTCACC CGTTCTTTTA 
    CGTACAAAGT AACTATTATT AACCACTAAG AAGTAGGAAG TCTTAGGTTA 
    GGACTTTAAT TTTTCGGTTT GGACTTAGGT TAGCACCGCC CTATTTTAAT 
    TTTATTTTCA C

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17360808 [Map]; Strand: w
      • AT1G47350.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: -86; Region: promoter
      • AT1G47360.1 - [+] show detail - transposable element gene
        Distance: -462; Region: promoter
    Flanking Genome Sequence: GT5886 - 5-prime edge 
    GGCTCATATT GTTCTTAAGA ATGTCTTAAG TTGGGAGAGA CTCTGAAGCA 
    TTCAGAGGGT TTCATTTCAT GAGTTAGAGG AAGAGCCAGG TGAGAAGCAC 
    GTGTGTTGAC TCGTTGAAGC TGCAACGGTC AATGAGGGCA GTTCGGTAAT 
    TTCGGTGTTC CTCTGCAATT CTTTATCTTC TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17360778 [Map]; Strand: w
      • AT1G47350.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: -56; Region: promoter
      • AT1G47360.1 - [+] show detail - transposable element gene
        Distance: -492; Region: promoter
    Flanking Genome Sequence: GT5886 - 5-prime edge 
    CCTGCTTGTT ATACATTATT TGAAGGAAGT GGCTCATATT GTTCTTAAGG 
    AATGTCTTAA GTATGGGAGA GACTCTGAAG CATTCAGAGG GTTTCATTTC 
    ATGAGTTAGA GGAAGAGCCA GGTGAGAAGC ACGTGTGTTG ACTCGTTGAA 
    GCTGCAACGG TCAATGAGGG CAGTTCGGTA ATTTCGGTGT TCCTCTGCAA 
    TTCTTTATCT TCTTCATC

AT1G47350.1

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G47340.1); Has 838 Blast hits to 807 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 838; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G47360.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.2e-307 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR