GT5910

CSHL Arabidopsis genetrap mutant lines

Original: GT5910

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT5910

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT5910 - 3-prime edge 
    GAGAACATTC TTATGGATTC AAAATCATTT TAATTTGGTA GGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6905619 [Map]; Strand: c
      • AT4G11355.1 - [+] show detail - pre-tRNA
        Distance: -62; Region: promoter
      • AT4G11360.1 - [+] show detail - RING-H2 finger A1B
        Distance: -395; Region: promoter
    Flanking Genome Sequence: GT5910 - 3-prime edge 
    CGGACCACGT TACCGACCGT TTTCATCCCT ACTTTTAAGA GAGAATCATT 
    CTTATGGATT CAAAATCATT TTAATTTGGT AGGGACCTAT AGATTCAAGA 
    TCATGTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6905535 [Map]; Strand: c
      • AT4G11355.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G11360.1 - [+] show detail - RING-H2 finger A1B
        Distance: -479; Region: promoter
    Flanking Genome Sequence: GT5910 - 5-prime edge 
    TCTCTTCNAG GANAAATATA TAATTTAAAG TTCATATTCA TGAACAGATG 
    GGGATGTAGC TCAGATGGTA GAGCGCTCGC TTAGCATGCG AGAGGCACGG 
    GGATCGATAC CCCGCATCTC CATTTTTTTG TTGTGAATTT ATCCTTGTTT 
    TTTGTCGTTT TATTATTCCC ACTAAAAAAT ACACATTCTT TGATATTGGG 
    CCTTTGGTAC NAAACCCATA ATTTGGACGC ACTCATACTT TAATTCGCAC 
    GCNTTTAAAC ACTCTTTANT ACTTTATTAT TNANACANAA CGGTGATGAA 
    NTCATCTTGT CGTAGTTCTA TATTCGGTTT GCACAAANAG ACACAACNAA 
    TTATCCAATG TCANANCGTT TCACTTTGTT TNCTCANAAA TATCTTTAAA 
    GTTTANTCAT GCAAAATCTT CAAAATTTAG CAACACACTG ANTTTTCAAA 
    NTTTAGCAAC ACACTGAACC TTCAAAATTT AGCAACACAC TGAATTTTCA 
    AATTTNAGCA NCNCACTGAA TTTTCAAAAT TTAGCTACAC AGTGATATCA 
    NATTAGTAAT NCTNACCTTG NAAATATAAA ATTTGTTGTA NTACANAAGG 
    TTTTGAAATC ANNTTAAAAA TGTAATCCCT ATTATATNGG NTTACTATAT 
    GAANC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT5910 - 5-prime edge 
    TCCATTTTTT TGTTGTGAAT TTATCCTTGT TTTTTGTCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6905529 [Map]; Strand: c
      • AT4G11355.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G11360.1 - [+] show detail - RING-H2 finger A1B
        Distance: -485; Region: promoter
    Flanking Genome Sequence: GT5910 - 5-prime edge 
    TNNTNTGCNA TATATAATTT AAAGTTCATA TTCATGAACA GATGGGGATG 
    TAGCTCAGAT GGTAGAGCGC TCGCTTAGCA TGCGAGAGGC ACGGGGATCG 
    ATACCCCGCA TCTCCATTTT TTTGTTGTGA ATTTATCCTT GTTTTTTGTC 
    GTTTTATTAT TCCCACTAAA AGATACACAT TCTTTGATAT TGGGCCTTTG 
    GTACNAAACC CATAATTTGG ACGCACTCAT ACTTTAATTC GCACGCATTT 
    AGACACTCTT TAGTACTTTA TTATTCAGAC ATAACGGTGA TGAANTCATC 
    TTGTCGTAGT TCTATATTCG GTTTGCACAA AGAGACACAA CGAATTATCC 
    AATGTCAGAG CGTTTCACTT TGTTTTCTCA NAAATATCTT TAAAGTTTAG 
    TCATGCANAA TCTTCAAAAT TTAGCAACAC ACTGAGTTTT CAAAATTTAG 
    CAACACACTG AACCTTCAAA ATTTAGCAAC ACACTGAATT TTCAAATTTT 
    AGCAACACAC TGAATTTTCA AAATTTAGCT ACACAGTGAT ATCAGATTAG 
    TAATTCTTAG CTTGCAAATA TAGAATTTGT TGTAGTACAG ACATTTTGAA 
    TCAAGTAAAG ATGTAATCAT ATTATATAAG TTACTATATG ATCCTCCACG 
    TAATGGCTAA CCGCTTAACG GTACTTGAAA AAGAGAAACA AAAATATANT 
    GTTAAAGACT ANTCGATTTA GTATAANTTT GTAAGCTACN AAAGAACTGC 
    AGTAATGGAT GGCTCCNCCA TCTTATTTAG CCTCTATATN TTCCCTTCAA 
    NAATTGTGAT TCTGATTTAT GAATCATCTT CTTCGGTTCA CCAAACAAAT 
    TTTACTTCAA AAAAAACAAA TTTTAAAATA GGTTATAAAA AACTTCACCT 
    ANAACATTTC AATTCCCCCA ANTTACCTAA ACCAAAAAAC CTTGTTCTAT 
    NCNTGATCAA AACCGC

AT4G11355.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ala (anticodon: AGC)
Link
InterPro Scan - TAIR

AT4G11360.1

Model type
Protein coding
Short Description
RING-H2 finger A1B
Curator Summary
Encodes a putative RING-H2 finger protein RHA1b.
Computational Description
RING-H2 finger A1B (RHA1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to cadmium ion, response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A1A (TAIR:AT4G11370.1); Has 7546 Blast hits to 7528 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 1890; Fungi - 589; Plants - 4122; Viruses - 19; Other Eukaryotes - 926 (source: NCBI BLink).
Link
InterPro Scan - TAIR