GT5952

CSHL Arabidopsis genetrap mutant lines

Original: GT5952

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT5952

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11601046 [Map]; Strand: w
      • AT4G21860.1 - [+] show detail - methionine sulfoxide reductase B 2
        Distance: 0; Region: intron1 (CDS)
      • AT4G21860.2 - [+] show detail - methionine sulfoxide reductase B 2
        Distance: 0; Region: intron1 (CDS)
      • AT4G21860.3 - [+] show detail - methionine sulfoxide reductase B 2
        Distance: 0; Region: intron1 (CDS)
      • AT4G21865.1 - [+] show detail - unknown protein; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; B...
        Distance: -859; Region: promoter
    Flanking Genome Sequence: GT5952 - 3-prime edge 
    CCTAGTTTCA AGTTTACTTG GTGATTGGTG TTGGAGAGAT TTGATGCATT 
    GAACTTGAAA ATTGAGTTTT GTGGAATAAA TGTTGTTACC TGATCCTTAA 
    ATTAACGATT AGGAGATATA TTCTATGAAA GATTAGAGTG ATTTTTTCAA 
    NGTTTATCAC TTTTTCTTCT TACACTAAAA CTCTGTTGCT GACTTGCTGT 
    TGTATATGGT TGTCTCAGTT GCTATGAACC TTACTATTAG GATTGTTCTC 
    TCGGTGACAT GAAAATACTC AGTTAGTCTT GTGTCTTAGC TTAGTCTACC 
    TTAATGGCCA CCGAGAAGCC AAAGCAGTTT AAGTAGAGTC TTCTTCTCTC 
    TCGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11601178 [Map]; Strand: w
      • AT4G21860.1 - [+] show detail - methionine sulfoxide reductase B 2
        Distance: 0; Region: intron1 (CDS)
      • AT4G21860.2 - [+] show detail - methionine sulfoxide reductase B 2
        Distance: 0; Region: intron1 (CDS)
      • AT4G21860.3 - [+] show detail - methionine sulfoxide reductase B 2
        Distance: 0; Region: intron1 (CDS)
      • AT4G21865.1 - [+] show detail - unknown protein; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; B...
        Distance: -727; Region: promoter
    Flanking Genome Sequence: GT5952 - 5-prime edge 
    CTCTTTTATA ATTTTATGAT CATCAATTTC CAANTCAACA CATGCAAGAA 
    CACTNTCTGA AGCAGAACAC TCAAAACCAG ATCAAAACTG AGTCACGAAA 
    TCACTTACTC AGTGCCTTTC TGTCTGAGAA TCCTAAATTG TTCAGGAGAA 
    AGAATCGTAC GCCACTCTTC TTCCGGCTTA TTGACCGATT CAGGAGCAGA 
    AGAACCCATT GACACAATAC GACCACCGTG AAAACCTCGA CGGAGCGACG 
    GAAATGACAA AGGANATGAT GAGAAACGAA GGANGTTACG ATGAGACCGA 
    GAGGCAAAAG AAGGTTTAAC GAAAGCTGCT TTAATGGTGG AAACGAANGT 
    GACAGACGTG GCTGAATAAA CACGACCAGG TGTTATGATA TTGAACGCCA 
    TTTGTTTGGC TTTTTATCTC CTCTCTTCCT TCTTCTCNCT CG

AT4G21860.1

Model type
Protein coding
Short Description
methionine sulfoxide reductase B 2
Computational Description
methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21860.2

Model type
Protein coding
Short Description
methionine sulfoxide reductase B 2
Computational Description
methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B5 (TAIR:AT4G04830.1); Has 7963 Blast hits to 7960 proteins in 2230 species: Archae - 73; Bacteria - 4877; Metazoa - 209; Fungi - 131; Plants - 206; Viruses - 1; Other Eukaryotes - 2466 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21860.3

Model type
Protein coding
Short Description
methionine sulfoxide reductase B 2
Computational Description
methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1).
Link
InterPro Scan - TAIR

AT4G21865.1

Model type
Protein coding
Computational Description
unknown protein; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR