GT5969

CSHL Arabidopsis genetrap mutant lines

Original: GT5969

Phenotypes

Morphological phenotypes

Original description

  • cer and sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT5969

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7968269 [Map]; Strand: c
      • AT1G22550.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT5969 - 3-prime edge 
    ATCNNCCACC GTTTTCATCC GTACCGGCGG CGGTGGCTGT TGATTGTCCG 
    AGAGGTCCGG TGAGGTAAGT AATTAAGTTG GAACCAATCC CAAAGTAAGC 
    AAATCTTTCT CCAACTTCCA CACCTAANAA ACCACACCAA AAAAACAAAA 
    TAAATTGTTT AAAAAATAAT GGTTTATGAG ACAATTTACA AATCACAAAA 
    ACTGTTCTTT ACCTATAATG TACCAGGCGG ATCTCCATCC GCCGGTGGAA 
    GATTTTCCGG CAGGAAGTCC ACGGTGGTCA ACGGAGTCGC TGACGGAATC 
    TTCTATAAGT GCAGCTTCTT CTTCGGCTAT CGCCATTTTC TTCTCNNACG 
    ACNATGGATT TTAAGCTATN TCTATTTATN TATATTTAGT TTTGATATTN 
    AAGCTATATT TGCTGNNTGA ATAATGAACC CCATCAATAG ATGTGANNTN 
    TNCCANCCTT TCNNNATANT CTAGTCAGAT GAGTNGANGG ATCATGACNA 
    NCNGGTATTA TTTTTATGAT TTGTACNGCC C

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25712773 [Map]; Strand: c
      • AT1G68526.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -535; Region: promoter
      • AT1G68530.1 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: 0; Region: exon2 (3UTR)
      • AT1G68530.2 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT5969 - 5-prime edge 
    ATTTTGTGTT ACGGTTTAGG TTTATTTGGT CTCGGGATTT GGTTTAAAGG 
    GGATTGAGAA ATGGGAANTT AGANAGAANA AAAAGCAAAG CATAAATGTT 
    TGTATTTAAT TGCTCTGCAT ATACTTAAAT CTCTGCTTTT CATTTGGGGT 
    ATTTTTTAGT TTCTCGTGCT GTAATTAATA ACTTGTGGTG TACTCAAATA 
    ANAATATTTC TCTCTGTTTT ATTATTTTTA AATTGGAAAA TAAACTTCTT 
    TGTTTTCATC TCNCTC

AT1G22550.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G22570.1); Has 7743 Blast hits to 7641 proteins in 1463 species: Archae - 0; Bacteria - 4037; Metazoa - 494; Fungi - 461; Plants - 2187; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68526.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68530.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 6
Curator Summary
Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 5 (TAIR:AT1G25450.1); Has 4523 Blast hits to 4503 proteins in 1079 species: Archae - 0; Bacteria - 1483; Metazoa - 0; Fungi - 25; Plants - 2866; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68530.2

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 6
Curator Summary
Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 5 (TAIR:AT1G25450.1); Has 1620 Blast hits to 1616 proteins in 389 species: Archae - 0; Bacteria - 691; Metazoa - 0; Fungi - 0; Plants - 849; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link
InterPro Scan - TAIR