GT6011

CSHL Arabidopsis genetrap mutant lines

Original: GT6011

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6011

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4402851 [Map]; Strand: c
      • AT3G13510.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -649; Region: promoter
    Flanking Genome Sequence: GT6011 - 3-prime edge 
    TTTCATCCCT ACTAAACACA GACAGATTAC GTGCGATCTC TCGTGTGCGA 
    TGCTACTAAA GTAGTAGTTA CTAGCTGTCA CATATACAAA AAAGCGTGGC 
    TCATCCATGG TTGGCTGACG TGGATTTAAC GACGGTACTC AAGATTTTAA 
    CGCCTCACCG TTTAAGTTCC CCATTCAAAG AAGACAAAAA CATCCTTGTT 
    CCCAAGGGGG AAAATAACAT TTTTGCTTTC ATCGAGAGGG GTAAAACAGG 
    GAAATTTGGG AGATTAATGT GGAAAAGATC CCCAAGGTTG TCTTCAAACC 
    ATAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4402833 [Map]; Strand: c
      • AT3G13510.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -667; Region: promoter
    Flanking Genome Sequence: GT6011 - 3-prime edge 
    ANGAGACGCN TTGCNACTTT TCATCCCTAC TAAACACAGA CAGNATTACG 
    TGCGATCTCT CGTGTGCGAT GCTACTAGAG TAGTAGTTAC TAGCTGTCAC 
    ATATACAAAA AAGCGTGGCT CATCCATGGT TGGCTGACGT GGATTTAACG 
    ACGGTACTCA AGATTTTAAC GCCTCACCGT TTAAGTTCCC CATTCAAANA 
    AGACAAAAAC ATCCTTGTTC CCAAGGGGGA AAATAACATT TTTGCTTTCA 
    TCGAGAGGGG TAAAACAGGG AAATTTGGGA GATTAATGTG GAAGAGATCC 
    CCAAGGTTGT CTTCAAACCA TANACACCAC NTGACAGAGA GACCAATTAT 
    ACTCAAAAAG GTAAAGACCA ATTTGAAAAA CATTACAATT TTAATAATGC 
    TCATAGACTC ATATTTAAAG ATTACAAGAA CCAACTAACT AATTGACATT 
    ATCATTCATC AAAATAAAAA CCACCTAATT GGGAATTTAT AGTCTTACAG 
    TGGGATTGGT AAGACGTTTC TAATATGCTT TCTTNTCNCN NTAACAACCT 
    CNNCTCNNTC CANCA

AT3G13510.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 759 Blast hits to 705 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR