GT6018

CSHL Arabidopsis genetrap mutant lines

Original: GT6018

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6018

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5258548 [Map]; Strand: w
      • AT5G16090.1 - [+] show detail - INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterP...
        Distance: -1318; Region: intergenic
      • AT5G16100.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3; Region: intergenic
    Flanking Genome Sequence: GT6018 - 3-prime edge 
    ATACNTTGCG NCCACAGGTT ATATCTCTAG TTTCTCAATT TAATATATAG 
    CCACTAATAA CAACACATGA TCTGTTAGGG TTACACGTTA CTTGCACTAT 
    AAGGAACTCT TTTAAAAATA GAGGGAGTGA TAGATATATT TTGATTTTGG 
    GTTGCTGACA TGGTAGTTTT GGTATAAGAA AGTCTTTGGG TAATCTGACT 
    ATATAGAGAA CAGTGACCGA ACGTTAAGAT TTGAAAAGAG TAGTTCAAAT 
    TATCTTATTG TAGACTTACA ACCACTAGTC TTCCTAGAAC AAAGATGACA 
    AAGACTGCAT TAGGATTAGC ATTTCATTTG TATTATGTGA CTTGTGCTAC 
    AAGAAATTAT TTTCATTGTA GGTTTTTATT AGAGAAGGCA CTAATTTCCG 
    GTGTTTGGTT TATCTTCTAT GTGCCGAGGA CAAGAACAGA GAGAAAGAAC 
    TAAAAATATG ACACTGAAGG ATGTTTGTAA GCTTTTTGAT CTCCCAATTG 
    AACAAGCGGC GAAGGAGATG AAAGTGTGTG TGACAGTTCT AAAAAAGATC 
    TGTCGGAAAG GANGCCTTCC TCGGTGGCCT CACCGCAAAG TAATTGAATC 
    AAAACACTAT AAACAAGTCT CACTTTCTAA AAGTTTGTTT TAGCTTTCTC 
    TGTTANTTTA ACAAATTATC TTTTTAAATT GATTTGTAAA TCAAAAGCCT 
    CCAGGCNAAA ATCNAGGCNT TGAAAACTTT GTTACTCCCN GCAAAGGATG 
    GTGAATTTAA GGCTCCTACT GAANCTGAAA TTGAAANGCT ACACNTCAAT 
    AAACAAATTT GCCNTGACNT ACTCCAAAAT ATTTATTTGT TTTTCTTCCA 
    ATCCCAANAC TGATACCTNC CTNAATTTAT CCTTTGTTAC TTTTGANACC 
    CNANTANTTN AATTATATTT TTTAATTTCA ATTATTGACT TTTCCCCNAA 
    ACATAAAN

AT5G16090.1

Model type
Protein coding
Computational Description
INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.1); Has 1311 Blast hits to 954 proteins in 240 species: Archae - 0; Bacteria - 0; Metazoa - 634; Fungi - 179; Plants - 321; Viruses - 27; Other Eukaryotes - 150 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G16100.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR