GT6032

CSHL Arabidopsis genetrap mutant lines

Original: GT6032

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6032

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22500437 [Map]; Strand: c
      • AT5G55540.1 - [+] show detail - tornado 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6032 - 5-prime edge
    CTCATGGTTT CTTCAAGCAA TCAAAGACCC ACAACAAACT TTCTTCAATC 
    TTCAAACCCT ATCTTTCTCC TCTTCCGGAA ACACCACGCA TTGTCAGCTA
    ATAACAGAGA GCTCCATGAA CATCAACGTC ACTAGAGACA ACCTCACTTC
    ACTTTCCCAG ATCTTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22500478 [Map]; Strand: c
      • AT5G55540.1 - [+] show detail - tornado 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6032 - 5-prime edge
    TCTTCTNGNC TGGATCCNAG NNNNGCCTCG GTGAAATACT CTCNTGGTGA 
    CGATCNAGCN ATCAAAGACC CACAACAAAC TTTCTTCAAT CTTCAAACCC
    TATCTTTCTC CTCTTCCGGA AACACCACGC ATTGTCAGCT AATAACAGAG
    AGCTCCATGA ACATCAACGT CACTAGAGAC AACCTCACTT CACTTTCCCA
    GATCTTCNTC TCNCTCGACG AAAA

AT5G55540.1

Model type
Protein coding
Short Description
tornado 1
Curator Summary
Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.
Computational Description
TORNADO 1 (TRN1); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G10510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR