GT6033

CSHL Arabidopsis genetrap mutant lines

Original: GT6033

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6033

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1177622 [Map]; Strand: w
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT6033 - 3-prime edge 
    TCATCCCTAC TCAAACCTTT ATGTTCTAAG TGTCTGGTTT ATGAAGATAA 
    AGATTTGAAA TTGACATCTT CTGAAGTAAA TGATGGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3246035 [Map]; Strand: c
      • AT5G10320.1 - [+] show detail - unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; ...
        Distance: 0; Region: intron3 (CDS)
      • AT5G10320.2 - [+] show detail - unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; ...
        Distance: 0; Region: intron3 (CDS)
      • AT5G10320.3 - [+] show detail - unknown protein; Has 51 Blast hits to 50 proteins in 17 species: Archae - 0; ...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT6033 - 3-prime edge 
    TNNGTGGACG GNTTGCGCCC GGCTCTTCAC ACAACTATTT TGGCACTCTG 
    CTGCATAAAA ATTGTAACGA TCAAGAATAC TCAGAAGTCA GAATTAATCG 
    AAGTTGTGAC ATCATTATCT AATATTAAAG CCACGAAGCT AAAACGAAAG 
    NTAGTGTATG GAGAGAGTAG AACCTGAAAT TGTGTTAAGT GGTGTAGTAG 
    CTTCATCGTC TAGCTCAAGT GATCTCGATA TCTCTTCCAG GAAGGGTCCT 
    GAGATCTAAA TGTAACGAAA CACATTGAAA GAAGAGCGAT ATAATCTTAG 
    TTTTATAGAA AATTAGTTAA AGAATCTAGC TTTACTTACT TTCGGTAAGA 
    ACTCAGAGAG TAGACCCAGT TTCGAATCTA AATCGAGTTC GCCGCATGGT 
    TGTACCTTGA AAGAAGAATG AATTTTAGAT TTTTTTTTTT ACGGANCNTC 
    AAANCTGAAA ANTNCNAAAA NCCTAANCTT TNNGGTTCCC NGGAAANGGA 
    CTAAATTGGA AAGGAACCNA AAAAAAAAAC CTNAANCGGA AAATAAAAAA 
    AAAATTNANC NGTGACAATT NNNGGATNAT ACANCANTCT GAAACTNCNC 
    CATTCNCTTT ANCNCTNCCN TCAAAAATAA TNAACNCTTT TAACAAATTT 
    NNTCCCAAAA NCAATNCCNA CTTTTTTAAA TNAAANTTNT TATTTNCNCA 
    AAAACAANCG TTTTTTTNTA AAATNCNNCT TTCCCTAAAA ANCTAAAAAC 
    AAATGGGAAT TTGGTCTTTA CTACAACNTT CCCTCAAAAG GTTGGCNAGN 
    ACTCNC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3245937 [Map]; Strand: c
      • AT5G10320.1 - [+] show detail - unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; ...
        Distance: 0; Region: exon4 (CDS)
      • AT5G10320.2 - [+] show detail - unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; ...
        Distance: 0; Region: exon4 (CDS)
      • AT5G10320.3 - [+] show detail - unknown protein; Has 51 Blast hits to 50 proteins in 17 species: Archae - 0; ...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT6033 - 5-prime edge 
    AACCANTATG AAANGGGNCN GTGGATCCTT ACATGTCACA GAAGCACCAA 
    GAATTGTGGC AATGGTCGGG CTAGATGCAA TGAAGAGAGC AAACTCTACA 
    CTTGAGGATT TCGTAAGTTT TTCCTCTTAC AAATGCATTG ATACTCTCTG 
    TCTTCAATGG TTGAGTTAGC TAATCATAAT AGATAACATG ATCGGATTGT 
    GTANATAACT GTCCATATCT TGTTGCAGTC CAGGTCTTAT TTCATGTCTC 
    ANCGGTTGGN TATTAACGAA CCGCAATCAA TATTCAGATA TTTACCTGTG 
    CTTTCATTCA CAGAGAGTTA CATATATCAG GTAATAATAT GTGTCTTTCT 
    GTTGTTTTCT CCCTCGTGTC TGTAAGATTT TCTTTGTTTT GAGTAACCGT 
    GCCCTGCAAC AATGACAATG TTACCTGAAT CTAAGAAATG TAGGTCTTTT 
    GTTTCTGTAN ATGGATGCTC TNAATGAGAA GATANTCAGT GAATCAGCTT 
    GTGGATCCCA AGTCATTGTA AGATGGCCTG TGTAANAATA TTNAGGAGTA 
    TAGGANTCNC CCNTTCAGTG TACCAGCTAA TGGTTTGAGA TGCCAGTATT 
    CNANTCCTGG ATGGAANTGC NGAATCCCNA CTTCTGTTTT GAAACTAACC 
    CCGTCTGANC CCCCTTGGGA NATCTGCTTG ANCGTGANGC CCNTTTGANA 
    AACAGGTATT TCCTTGCCNA TAACTTTTGT NTTCCTCACC GTTTNCNTTA 
    GGGGAAGGGA CNNACNTATA CACTGANCCT TATTNATTTT GTTGCTGGGT 
    TANAATNCNN CCNNANTTTA ATTCCGGGTG AANANTATTG GGCNTTAAAA 
    ANAAAGCTCN GTCCTGCACC TCCAACCAAA AACCCGTTAC TGGTTCCGTT 
    AATNGTTNNC CGTTTGAANT NGNTTTANCT TTGCCCNNAT GGTTCCTCCG 
    NTNCCTTCAT CAGAATCNNT TCCCNT

AT2G03860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT5G10320.1

Model type
Protein coding
Computational Description
unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10320.2

Model type
Protein coding
Computational Description
unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10320.3

Model type
Protein coding
Computational Description
unknown protein; Has 51 Blast hits to 50 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR