GT6040

CSHL Arabidopsis genetrap mutant lines

Original: GT6040

Phenotypes

Morphological phenotypes

Original description

  • tiny or dead plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6040

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22254511 [Map]; Strand: w
      • AT3G60210.1 - [+] show detail - GroES-like family protein
        Distance: -1613; Region: intergenic
      • AT3G60220.1 - [+] show detail - TOXICOS EN LEVADURA 4
        Distance: 87; Region: intergenic
    Flanking Genome Sequence: GT6040 - 3-prime edge 
    ATTTTCATTT GGATAACTTT CTTATTGAAT ATCAAGAAGA AAAAAAAACT 
    ATTAGGTTTA TAACACACAC AAAAACAATC AAAATCCGAA CCGTATTTAA 
    AAAAACTGGT TTCCAAAGAT GAAAAGCATA AGTTTTTGGG CCAACTTAGT 
    TAGCCCAAAC TAAATCGAAC AAACCACATG ATCTTTTTAA AAAAGCCACC 
    ACAAAAGTCT GTAAAAAAAG TGTTTGGTCC AATAACAACA CACACAAACA 
    CAGCAAGAAC GAGCGAATCT CCTCAACTTC CCAACCTAAT AATAACTTGC 
    CGTGTCGTGA CTCACAGAGT AGGAAGCTAA CGTTATCCAA TGCTTCGACT 
    TTCATTACAG TACCTAAACC CTTCATCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22254683 [Map]; Strand: w
      • AT3G60220.1 - [+] show detail - TOXICOS EN LEVADURA 4
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT6040 - 5-prime edge 
    CCATTTAAAA GTAATAATAT ATAACTAGAG AATTCATCTG TTATATCGTC 
    AGAAAAAGAA AAAAAAAATC GGTAATTGAA CCAAAAAACT TCAAATATTG 
    TTTATATGTA CAAACCAAAA TTAATGCTCT GTTTTTTTTC CCAATTAAAT 
    AAACAAATTT CACCAACTCA CCTGTCACTC ACACCC

AT3G60210.1

Model type
Protein coding
Short Description
GroES-like family protein
Computational Description
GroES-like family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chloroplast chaperonin 10 (TAIR:AT2G44650.1); Has 3302 Blast hits to 3296 proteins in 900 species: Archae - 7; Bacteria - 1960; Metazoa - 11; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60220.1

Model type
Protein coding
Short Description
TOXICOS EN LEVADURA 4
Curator Summary
Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4).
Computational Description
TOXICOS EN LEVADURA 4 (ATL4); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 8923 Blast hits to 8901 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 2301; Fungi - 667; Plants - 4759; Viruses - 54; Other Eukaryotes - 1134 (source: NCBI BLink).
Link
InterPro Scan - TAIR