GT6055

CSHL Arabidopsis genetrap mutant lines

Original: GT6055

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6055

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 188467 [Map]; Strand: c
      • AT2G01430.1 - [+] show detail - homeobox-leucine zipper protein 17
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT6055 - 3-prime edge 
    TATGATTATA GACTTATAGT TATAATTTGG GAAACCGTCA TAATAGTTAT 
    ACGACCAATG TTGAAATTCT TCTTATTTAT TGCACCATAC CTTTCCCATC 
    TGCTCACAAT TATTGTGGGA TCTAGATAAA GGAACTATTT TTATATTGAG 
    TCTAAAAAAG AAAAGACAAT CTAACCAATT TTCAGTTTGA ATAACAATGA 
    CTATCGGATT ATATAGATTG ATTACTAATA TGTGTGTTTA CACATGAACA 
    ATATATATTC ATGCAGAAAC TAAAGACATA TAACCTATAT ACGTTACCGG 
    GAAATTGTAA TAAAACGACT GATGCGTAAT GAGTTCATGA AACATTGAGA 
    CATATGCATT GACACGTGAA TATTTAGGTA AATGAAATAA TGTATACACG 
    TATTGACGTA CACGGGCCAA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 188308 [Map]; Strand: c
      • AT2G01430.1 - [+] show detail - homeobox-leucine zipper protein 17
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT6055 - 5-prime edge 
    CCTTTTTTCG TTTTGAATTT TTTATATGTT TGATTTTTTA TTTTTTAATA 
    AATTTTTAAT TAAATCAATC AACGTGTTTT CTTTTTTGTG CCTCGTGTAC 
    TTGCTTTCTC ATCAATGCCC TTTGACTCAT AATTCATTGG GCAGTTCATG 
    CGTTTTTAAT TCCATGATTT TTTATATTTG CATCATCACC TAGCATTTGA 
    TCATTGCTTG CATGTTATAA TTTACAAGTG GTACAAAAAC ATCTATAAGT 
    TTAATGTGTG TACACGCGTA CATATCAAAA AATAACATAT CGTACTGTAC 
    ATTTTTGGAT TTGTTTGGAT T

AT2G01430.1

Model type
Protein coding
Short Description
homeobox-leucine zipper protein 17
Computational Description
homeobox-leucine zipper protein 17 (HB17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein 18 (TAIR:AT1G70920.1); Has 8030 Blast hits to 8017 proteins in 519 species: Archae - 0; Bacteria - 0; Metazoa - 5631; Fungi - 276; Plants - 1985; Viruses - 4; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR