GT6061

CSHL Arabidopsis genetrap mutant lines

Original: GT6061

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6061

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27313193 [Map]; Strand: w
      • AT1G72530.1 - [+] show detail - plastid developmental protein DAG, putative
        Distance: 0; Region: exon1 (CDS)
      • AT1G72530.2 - [+] show detail - plastid developmental protein DAG, putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6061 - 3-prime edge 
    TGGCTTGGGT TTCGACAAAG CTTTGGACAA TATGATATCT ATTTGGGTAT 
    CCATTAGGAG GCTTCATGAG AACCAGCCAA TGCTTGTAAT CTCATCCCTC 
    GACTAAACTC GGTTCTCGAA TTAACTCATA CCATCTACTC GTTTCCGAGT 
    TAATAGAACC ACAGTTACCG GAGAATGGAG ACAACGGAGA AAGTCGGAAC 
    CGGACGGCCG CCGTCAAATT TAACGGTCTT CTGATGATCC TCGCCATTGA 
    TAATGATGGT CCAACATTAA AGGCGATGAA ACTTCTATAA ACGTCAGAGC 
    CTCCGAAGAA ACTAGAGGTT TTCCTTTTAT TTTGAAGACT ATTTAAACCG 
    ATTTTTGGTT TGGTTTGGTT TTGGTCCGAT TGTTTACGGT TTGATACAAN 
    CCGATGCCAA ATAACAACAC TGTTTGTGTT GATGATCACT TTGGTTTTTA 
    TTTTAATTTG ATTGATGGTA AACGACCATT AAGAATTTTA ATTATTTAAA 
    GCCTTGATTT TTAATTATTT G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13495130 [Map]; Strand: w
      • AT4G26820.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -949; Region: promoter
      • AT4G26830.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT6061 - 5-prime edge 
    GAGTCGCGTG ACGACGTCAG CAGCTCCACC AAAGAAGCAC GTACCAACAC 
    GACGTGAGTT CTTCTGGTAG TAACTATTGA AAGCGTACGA AGCGTGAGCT 
    TCTAACGACT CAGGATGATA ACACGTGGCA CCTGGCTGAA TCGGGCGGCA 
    ATCAGCTCCT CCTTCTCCGC AAGCGTAATC AAGAGCCTCC TGAAGTTTCT 
    CCTTCGCTAC CTCTCCGTTC GAAACGCACC ACGTATGTCC CTCGTGCGTC 
    ACCGGAACCT TACCTCTGTT ACCGTTGACC GGCGTCGTTG ACTTTTTAGT 
    GAACGGAACG TTGTACACTT TCCCTTCGTT TGGGTAAAAC AAACCGTAGT 
    TTCTCTCAGA CGTTGGCCCC GGTTTCTGGT TTTCGTTGAA TAAAGCGAAT 
    AAATAGACGT TAAGTGGCTC CGTCGGTCTT AACGGTGTTC CTTTACCCGT 
    TAACACTCTC TTCACAAGTC CGACGTTATA CGCCGCCGCG TTAGATTCGC 
    TTGCACCAAT TTCATTCTCG TCTCCAACGG AAGGCCACCC TGTTTCCGTC 
    ACCATCACCT TAACGCCTTT AAATCCG

AT1G72530.1

Model type
Protein coding
Short Description
plastid developmental protein DAG, putative
Computational Description
plastid developmental protein DAG, putative; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 238 Blast hits to 218 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72530.2

Model type
Protein coding
Short Description
plastid developmental protein DAG, putative
Computational Description
plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 261 Blast hits to 241 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26820.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26830.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G55180.1); Has 2849 Blast hits to 2768 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 2823; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR