GT6103

CSHL Arabidopsis genetrap mutant lines

Original: GT6103

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6103

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2358797 [Map]; Strand: w
      • AT3G07370.1 - [+] show detail - carboxyl terminus of HSC70-interacting protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT6103 - 3-prime edge
    GACCGTTACC GACCGTTTTC ATCCCTACAT ATACTGCCCA TACTGAGCGT 
    TTGAAAGCTC TTGAACGAGT GTTTAAGAAA GCTGCAGAAG AAGATAAACC
    AACTGAGGTG CATTAAATTT TCTTTAAAAG CTTTTAAGAC CCATCGTTCA
    TTTATATTTG AGGTCAAATA CATTTCTGGT TTTTCATCTC ACTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2358886 [Map]; Strand: w
      • AT3G07370.1 - [+] show detail - carboxyl terminus of HSC70-interacting protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT6103 - 5-prime edge
    CCTATATGCT TCGTCTGAGG ACTCTTCTGT TCGAGACATA TCTAAAGCAC 
    GTTGTTGATT AAGAGCAGCC TCACAAGTTT CCCTAACACA AACATGAATA
    GTTCCATAAA GCCACAAAAG CACAGTTCCA AGTCGAATGA TAGCACTGGA
    TTAAGAAAGT TACAGAACCT ACTTCAAACT ATTCATCTCA CTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2358872 [Map]; Strand: w
      • AT3G07370.1 - [+] show detail - carboxyl terminus of HSC70-interacting protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT6103 - 5-prime edge
    ATCCTACTGT CATCTCTATA TGCTTCGTCT GAGGACTCTT CTGTTCGAGA 
    CATATCTAAA GCACGTTGTT GATTAAGAGC AGCCTCACAA GTTTCCCTAA
    CACAAACATG AATAGTTCCA TAAAGCCACA AAAGCACAGT TCCAAGTCGA
    ATGATAGCAC TGGATTAAGA AAGTTACAGA ACCTACTTCA AACTATTCAT
    CTCACTCGA

AT3G07370.1

Model type
Protein coding
Short Description
carboxyl terminus of HSC70-interacting protein
Curator Summary
Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment.
Computational Description
carboxyl terminus of HSC70-interacting protein (CHIP); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to salt stress, response to temperature stimulus, response to abscisic acid stimulus, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), U box domain (InterPro:IPR003613), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: protein phosphatase 5.2 (TAIR:AT2G42810.2); Has 6721 Blast hits to 5903 proteins in 442 species: Archae - 38; Bacteria - 482; Metazoa - 2236; Fungi - 1004; Plants - 1936; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).
Link
InterPro Scan - TAIR