GT6111

CSHL Arabidopsis genetrap mutant lines

Original: GT6111

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6111

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT6111 - 3-prime edge 
    TTTTCATCCC TAATCAAACT CGCTTATTCA ACAAGAAGAC TTAATTTTTT 
    TTTTTCCTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2890691 [Map]; Strand: c
      • AT1G08990.1 - [+] show detail - plant glycogenin-like starch initiation protein 5
        Distance: 0; Region: exon3 (CDS)
      • AT1G09000.1 - [+] show detail - NPK1-related protein kinase 1
        Distance: -346; Region: promoter
    Flanking Genome Sequence: GT6111 - 5-prime edge 
    GGGTTCNCCA GCNGTTTTTA GACGGGGCTT CTTCCTAGGG ATCTTTTATT 
    CTAATTTTCC AATGATTTTC AGGGAAAACC ATTGAGCTTA GCCATTTTCC 
    TCCACTTCTC AACGTTCNTC TCNCTCGACG G

AT1G08990.1

Model type
Protein coding
Short Description
plant glycogenin-like starch initiation protein 5
Computational Description
plant glycogenin-like starch initiation protein 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09000.1

Model type
Protein coding
Short Description
NPK1-related protein kinase 1
Curator Summary
NPK1-related protein kinase 1S
Computational Description
NPK1-related protein kinase 1 (NP1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: NPK1-related protein kinase 2 (TAIR:AT1G54960.1); Has 134800 Blast hits to 132536 proteins in 4716 species: Archae - 154; Bacteria - 14967; Metazoa - 50642; Fungi - 13331; Plants - 33399; Viruses - 553; Other Eukaryotes - 21754 (source: NCBI BLink).
Link
InterPro Scan - TAIR