GT6141

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

dead or tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT6141

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 183088 [Map]; Strand: c
- AT3G01470.1 - [+] show detail - homeobox 1
  Distance: 0; Region: intron3 (CDS)
- AT3G01472.1 - [+] show detail - conserved peptide upstream open reading frame 33
  Distance: 0; Region: intron3 (3UTR)

ATCCCTACAA GCAACCTCCT CCCATAAAAA GATAATTAAA CTCGTTGATT 
GATTTGATTC CCCAATTTTC TTTCTTTTTC TAGTCTCTCC TCTAATTTAT 
ATATGATTGA TGATGGATTC TCTCTATCAG CTTGTGTTGA AAAATAGGAA 
AAGCATATTC TCTTTTCACT TGATGCTTTT TTTATTTTTC TCCTTTGGAC 
CAATTAAGGT AAATCATTCA ATTTGTAATC TTGTTGAGAT AAATAATAGT 
CCCATGTATA AGTACCTCGG ATCTGAGCTT ATCGTTGTCC ATGACGATGG 
AGTCGTAGTT AGAAAGAAGT TGGTCGTAAG TGGACTTGAG AAGATCGTAG 
TCTCTCTCAA GCTGTTTTGT TTTCCAACGA GCTCGGCGAT TCTGAAACCA 
GACAGCCACT TGCCTTGGCT GTAGACCAAG CTTCTTGGCA AGCTGAGTCT 
TGCGTTCAGG CTCTAGCTTG TTCTCTGTCT CGAAGCTTTT CTCCAGCAGA 
TGCACCTGAA ACCATAATAT AATGAGAATC TATCAAACTT GTTTTTGAAT 
AATGGATCGT TAATTATTAT TGTGGATAGT GAG

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 182957 [Map]; Strand: c
  - AT3G01470.1 - [+] show detail - homeobox 1
    Distance: 0; Region: exon4 (CDS)
  - AT3G01472.1 - [+] show detail - conserved peptide upstream open reading frame 33
    Distance: 0; Region: exon4 (3UTR)
Flanking Genome Sequence: GT6141 - 5-prime edge
```
ATTAAAGTCA GAATCTTTCC AACCCGACAG GTTACTTCCC TGACCGAAAA 
GCTTCAGGGC AAACAAGAGA CAGCTAATGA ACCACCTGGT CAAGTGCCCG 
AACCAAACCA CCTTGATCCG GTTTA
```

AT3G01470.1

Model type: Protein coding
Short Description: homeobox 1
Curator Summary: Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.
Computational Description: homeobox 1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress, response to blue light, positive regulation of transcription, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 12515 Blast hits to 12478 proteins in 547 species: Archae - 0; Bacteria - 0; Metazoa - 9969; Fungi - 258; Plants - 2039; Viruses - 5; Other Eukaryotes - 244 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01472.1

Model type: Protein coding
Short Description: conserved peptide upstream open reading frame 33
Curator Summary: Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF33 represents a conserved upstream opening reading frame relative to major ORF AT3G01470.1
Computational Description: conserved peptide upstream open reading frame 33 (CPuORF33); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR