GT6149

CSHL Arabidopsis genetrap mutant lines

Original: GT6149

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6149

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1054340 [Map]; Strand: c
      • AT4G02400.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6149 - 3-prime edge
    AGATCNTGCG NCCTACTCAT TGTGCCTAAT TCAATCCTGA NGACTATTGC 
    CAATGAGAAA CGTCCTTTGA ACTCTGACGA AGATGACGAT GAGATCGATT
    CCGACGATGA AAACGTCGAT TTGTATGAGT ATGAAGAAGG TGTGCCTGAG
    GAAGAGTCTA AGAAAAACAA TCGCTATGAC CGCGTCGATA ACTACGACTA
    CGAGCTTCCC GAGGATTTCG AGGTTTTAAT TCTTTCTCTT CACTAATTCT
    CCGCCACTGT GTGAAATTGC AAGTTTTGAA CTTTAGTGAT CAGAAGATAC
    GATACAGATT TTGGTTTTAG CTCAATTAGG GTTTTTGCTA TCGGGTTTCT
    TACGTTATAA CAAATTGGTG AATCCAAAAT TGAGAGTTTT TAATTGATTG
    ATTGGTAATG AGATAGCAAC TTTAGATCTG GTCTTGGCAA TTGTTTTGTC
    CTTGTTATAT GTATGTCTTA TTGATAAAAG TGTCTATGAT CTCAATATAG
    GATGAAAATG TGGAGTCAGA TGATGATGAA GATGGTGGAA ACAGCGAGAA
    TGANGAAGGT GAAGGTGATG ATGATAGACA CACACGTATG TTGCAAGGTC
    TCACTGGAAT GCCAAGTGCT GCCTTTCNAG GTAAAGACTG ACTCTTTCTC
    CTCAGATTTT TGCTATTAGC TTTTCTGTTC CTCTCCCTCN NCNAAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1054240 [Map]; Strand: c
      • AT4G02400.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT6149 - 5-prime edge
    TNATCCCTCC CCNCCNCTCT TCTTGTTCTT AGCTAGGGGT TTTCGAAGTA 
    GATTTTCCTC TTTTCTCCCA TGGCTGCCTC TGC

AT4G02400.1

Model type
Protein coding
Short Description
U3 ribonucleoprotein (Utp) family protein
Computational Description
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).
Link
InterPro Scan - TAIR