GT6149

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6149

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 1054340 [Map]; Strand: c
- AT4G02400.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
  Distance: 0; Region: exon1 (CDS)

AGATCNTGCG NCCTACTCAT TGTGCCTAAT TCAATCCTGA NGACTATTGC 
CAATGAGAAA CGTCCTTTGA ACTCTGACGA AGATGACGAT GAGATCGATT 
CCGACGATGA AAACGTCGAT TTGTATGAGT ATGAAGAAGG TGTGCCTGAG 
GAAGAGTCTA AGAAAAACAA TCGCTATGAC CGCGTCGATA ACTACGACTA 
CGAGCTTCCC GAGGATTTCG AGGTTTTAAT TCTTTCTCTT CACTAATTCT 
CCGCCACTGT GTGAAATTGC AAGTTTTGAA CTTTAGTGAT CAGAAGATAC 
GATACAGATT TTGGTTTTAG CTCAATTAGG GTTTTTGCTA TCGGGTTTCT 
TACGTTATAA CAAATTGGTG AATCCAAAAT TGAGAGTTTT TAATTGATTG 
ATTGGTAATG AGATAGCAAC TTTAGATCTG GTCTTGGCAA TTGTTTTGTC 
CTTGTTATAT GTATGTCTTA TTGATAAAAG TGTCTATGAT CTCAATATAG 
GATGAAAATG TGGAGTCAGA TGATGATGAA GATGGTGGAA ACAGCGAGAA 
TGANGAAGGT GAAGGTGATG ATGATAGACA CACACGTATG TTGCAAGGTC 
TCACTGGAAT GCCAAGTGCT GCCTTTCNAG GTAAAGACTG ACTCTTTCTC 
CTCAGATTTT TGCTATTAGC TTTTCTGTTC CTCTCCCTCN NCNAAA

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 1054240 [Map]; Strand: c
  - AT4G02400.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: GT6149 - 5-prime edge
```
TNATCCCTCC CCNCCNCTCT TCTTGTTCTT AGCTAGGGGT TTTCGAAGTA 
GATTTTCCTC TTTTCTCCCA TGGCTGCCTC TGC
```

AT4G02400.1

Model type: Protein coding
Short Description: U3 ribonucleoprotein (Utp) family protein
Computational Description: U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).
Link: InterPro Scan - TAIR