GT6170

CSHL Arabidopsis genetrap mutant lines

Original: GT6170

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6170

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 517836 [Map]; Strand: w
      • AT4G01230.1 - [+] show detail - Reticulon family protein
        Distance: -428; Region: promoter
      • AT4G01240.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT6170 - 3-prime edge 
    CCCTCGATGG GTTGTGGTAC CTCAGAAAGA TAAACATGAT AAAGAAGTTT 
    TCTTCTCTGC TGTGTTAGAG AAACCTCCAA GACCCTTTAG ATGATTGATC 
    ATTGCATAGT CTCTGTCTTT ACTATTATCT TTGTAATCAT ATTCTTAAAA 
    CAAAACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 518210 [Map]; Strand: w
      • AT4G01230.1 - [+] show detail - Reticulon family protein
        Distance: -802; Region: promoter
      • AT4G01240.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT6170 - 5-prime edge 
    CGATCATCTC GTTGAATGGA GCGCCAAGGT TGATTGTTGC TGATACAATC 
    GTGACGTTCT GTTCTCTCAT TCTTGCTGCG AAAGTTCCAG TGCCAATGCT 
    GAAATCCAGT CCGATTCTAA TCTCTCCCGG TTTAATCTCG AGTACTTCAG 
    CTATCGAGAA ATCCGCAGTT TGGTTCATCT CTCTCGA

AT4G01230.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G46170.1); Has 1116 Blast hits to 1114 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 13; Plants - 467; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01240.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05390.1); Has 456 Blast hits to 442 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 455; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR