GT6177

CSHL Arabidopsis genetrap mutant lines

Original: GT6177

Phenotypes

Morphological phenotypes

Original description

  • very tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6177

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13402848 [Map]; Strand: w
      • AT2G31450.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: 0; Region: intron5 (CDS)
      • AT2G31450.2 - [+] show detail - DNA glycosylase superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT6177 - 3-prime edge 
    CAGTTGGTTC TATGGGATGT GATAAGGCCG GAAGCTTTCT ACCTCCTACG 
    GTATAATCAT TTTTCTCAAT TTAATGTTTA ATTTTTGTGT GTATGCTATG 
    AGAGATACAC TGAGTTTCTA GCTCTTTGAG CTTGACGTTT TCTGTTAACC 
    GTATAAAGCA CATTTTTTTT GTTTCTCTTT CAAACACAAC ATTCAATTTA 
    AGGATGCATT CATTGTAAAA AGGGTTTTTT CTTGAATAAA TTTCACATTC 
    ATTCAAAAAA AATAAAAAAA TAAAAAATAA AGCACATTTT TCCTCAAGTC 
    TCTTATGAAT TTGGATGTAC TTATCGCTAG TGAAAAGCTT AGGAAAGGAT 
    TCTTATTGTT TGCTCAAAAA AGCACCTTTT TCGCTTTGTT GAATTCAAAG 
    CAAAGGGATG GATTGTTCTT GTTTCAATTC TGATCATTTT TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13409226 [Map]; Strand: w
      • AT2G31470.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -571; Region: promoter
      • AT2G31480.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT6177 - 5-prime edge 
    TCAAATAGAC TTCAGTGACA GCGGATCCAA AAAAGACACT CACGAACCTT 
    TCTGGGCTCG AGCATCAGTC ATCAAGGATT GTGCTTCCAA CAATAAAGCT 
    TCC

AT2G31450.1

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14067 Blast hits to 14061 proteins in 2669 species: Archae - 367; Bacteria - 9308; Metazoa - 224; Fungi - 193; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31450.2

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14133 Blast hits to 14127 proteins in 2683 species: Archae - 365; Bacteria - 9377; Metazoa - 224; Fungi - 192; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31470.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Curator Summary
Encodes a F-Box protein DOR (Drought tolerance Repressor) functionally as an inhibitory factor for abscisic acid-induced stomatal closure under drought stress.
Computational Description
DROUGHT TOLERANCE REPRESSOR (DOR); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated domain, type 3 (InterPro:IPR013187), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G65850.1); Has 1551 Blast hits to 1464 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1551; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31480.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05894.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR