GT6179

CSHL Arabidopsis genetrap mutant lines

Original: GT6179

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6179

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19504459 [Map]; Strand: w
      • AT3G52580.1 - [+] show detail - Ribosomal protein S11 family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT6179 - 3-prime edge 
    TGATNNNNNA GGNTAAAGTT TTCATCCCTA GGTCTTGGTC TTGTTACCAC 
    CAGTGGCACG GAGTTTCACA TGTATGGCAG TGATTCCAAG TTCCTGTGTT 
    GCATAAATAT ATTCACCAAA TCGATTAAAT ATAGAAACAT AAAAGATTAT 
    CAAGTTGTCT GCTTGGTAAT GCAATTTCTT TGCCTTTACC TTGCATCGCT 
    GAGCAACATC TTGTGCCGCA AGCATAGCAG CATAAGGTGA GGACTCATCT 
    CTGTCGGCTT TCACCTTCAT TCCACCTACA GAAGTAGGAA ATCGAAACAG 
    CAATTTTAGC AACCCATTGT TATTTAAGAA CAATGCAATT TCCAAACAGA 
    TAAACAAAAG GAATTCCTCA AAAGTTAAAC GAACAAAGAC TAAAGACGCT 
    TCAGCTCACA CCCTATAGAG AAGACCATAA TACTAATAAC AATGGTAACT 
    AACTTAGTTC TATAAGCAGG AACACTGATG CCGTCAAGAA CAAAGCAATT 
    TCTATAAAGA TATCAACGAA TTCCTCGAAA AAACTTAAAA GAGCAGATAC 
    TAAGCAGAAC CTTTAGGCAG TCAAGAACTT CNTCTCTCCC A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19504450 [Map]; Strand: w
      • AT3G52580.1 - [+] show detail - Ribosomal protein S11 family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT6179 - 3-prime edge 
    AGANGNTTGN GTTCATCCCT AGGTCTTGGT CTTGTTACCA NCAGTGGCAC 
    GGAGTTTCAC ATGTATGGCA GTGATTCCAA GTTCCTGTGT TGCATAAATA 
    TATTCACCAA ATCGATTAAA TATAGAAACA TAAAAGATTA TCAAGTTGTC 
    TGCTTGGTAA TGCAATTTCT TTGCCTTTAC CTTGCATCGC TGAGCAACAT 
    CTTGTGCCGC AAGCATAGCA GCATAAGGTG AGGACTCATC TCTGTCGGCT 
    TTCACCTTCA TTCCACCTAC AGAAGTAGGA AATCGAAACA GCAATTTTAG 
    CAACCCATTG TTATTTAAGA ACAATGCAAT TTCCAAACAG ATAAACAAAA 
    GGAATTCCTC AAAAGTTAAA CGAACAAAGA CTAAAGACGC TTCAGCTCAC 
    ACCCTATAGA GAAGACCATA ATACTAATAA CAATGGTAAC TAACTTAGTT 
    CTATAAGCAG GAACACTGAT GCCGTCAAGA ACAAAGCAAT TTCTATAAAG 
    ATATCAACGA ATTCCTCGAA AAAACTTAAA AGAGCAGATA CTAAGCAGAA 
    CCTTTAGGCA GTCAAGAACT TCATCTCTCT CNANAAANG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19504557 [Map]; Strand: w
      • AT3G52580.1 - [+] show detail - Ribosomal protein S11 family protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT6179 - 5-prime edge 
    NCANAACNNN CTAGNCTGCT CTAAGNAGCC CTTGCCCGTT CTGGCATGAA 
    AATTGGTCGC ATTGGTAAAA CAGCAGCAAT CTTCAACTGT AATTGTTTAA 
    TTGCATCTTT GATTGAATAA ATCTCTGACA TTGTTCTTGT TTTCCTCAGA 
    GGATGTGACT CCAATCCCAA CCGACAGTAC CCGCAGAAAG GGTGGAAGAA 
    GAGGAAGGAG GCTCTGAGTT ATTTGGCCTC TCGTTGGATC TCCTTATGTA 
    GCTTTCTCAA TGTTTCATTT TGTTTTTTCT TAGTTTGAAA AGAGTTTTGG 
    AATTACTATG CTTTGTTATA GTCTCAACTC TGAACAGCTT CGGATCTTTT 
    TCTGTATGAC CATAAGATAT TCAAAAATTG GTAGTCATTT TATCTCACAA 
    AAAAACCGTG AATTTGTGCT GTATGATTTT GTAAAGTCTT AGGTGCCAAA 
    TCTTTGATTG GAGTTGATAA AATATTTTTA TTTGGTTGTA ATTTTGTAAT 
    ATCCCGGGAT ATTTCACAAA TTGAACATAG ACTACAGAAT TTTAGAAAAC 
    AAACTTTCTC TCTCTTATCT CACCTTTATC TTTTANAGAG AAAAANTTCG 
    ATTTCCGGTT GAGCGGACTG TATCTTTGTT TTTTTGTTTT GTAACATATT 
    CCGTTTTCCG ATTTANATCG GATCTCCTTT TCCGTTTTGT CGGACCTTCT 
    CCGGTTTATC CGGATCTAAT AATATCCTCT TAAACTTAAN CTAANTTTGG 
    ATCTGTTTTT TTGGTTANCC TCTTGTCANC NCCTCCTCNT CAGCAAGAAA 
    GGTGAAATTT TTGACAAATA AATCTAAAAA CCTGTTTTGT CTTGGACCTT 
    GGGAATGATA AAACAATTGT TTTTTANAAA ATTCTNTTGA ATTTGTTNCC 
    AAGAATTNAA AACCTNANTG AATGGANCTT TGAATNCAGC TCCCCCNTGT 
    TCCAACCC

AT3G52580.1

Model type
Protein coding
Short Description
Ribosomal protein S11 family protein
Computational Description
Ribosomal protein S11 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT3G11510.1); Has 8774 Blast hits to 8774 proteins in 2899 species: Archae - 250; Bacteria - 4863; Metazoa - 589; Fungi - 162; Plants - 729; Viruses - 0; Other Eukaryotes - 2181 (source: NCBI BLink).
Link
InterPro Scan - TAIR