GT6211

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6211

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT6211 - 3-prime edge
```
CGACCGTTTT CATCCCTAGT GTTATTGGTA AGATTATGCA TGGCCTACAC 
CCACTTTCTC TC
```
3 prime edge [+] show sequence
1. Chromosome: 4; Position: 54277 [Map]; Strand: c
  - AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
    Distance: -828; Region: promoter
Flanking Genome Sequence: GT6211 - 3-prime edge
```
ATCCCTAGTG TTATTGGTAA GATAATGCAT GGCCTACACC CACTTTCTCT 
CTTTTTTTTT CCTAAATTAA TTCATC
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 54156 [Map]; Strand: c
- AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -707; Region: promoter

CACACCATTC GCATTGCGCT CTCTCCTTCC TTCATATGAT CATATAGAAC 
GAAAGGTGGA AACTTTCTTA TTTTGTATGG ATCGTATACG CAATATGGTT 
GGGCAAAACT AATCTGTTTC AAACAAAATA CATGAAATAT CCCACAAGAA 
ACAAAGCAAA CTATAAAAAA AATAATGCGG TAAACACGGA AAATATCACA 
TATACGAATC CTTTTTCGGA TGTGTTTTCA ATCCTTTGAA TTAAATATGT 
CCACACTCGA TATGTAAAAA CAACTTGACC CATCACAATT ATGATCATAA 
AATACCAACG TACTGTTAGC CTAATGATAA AACTCCCAAG CA

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 8453542 [Map]; Strand: w
  - AT4G14740.1 - [+] show detail - Plant protein of unknown function (DUF828) with plant pleckstrin homology-lik...
    Distance: 0; Region: intron1 (CDS)
  - AT4G14740.3 - [+] show detail - Plant protein of unknown function (DUF828) with plant pleckstrin homology-lik...
    Distance: -457; Region: promoter
  - AT4G14740.2 - [+] show detail - Plant protein of unknown function (DUF828) with plant pleckstrin homology-lik...
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: GT6211 - 5-prime edge
```
GATTCATGAA CATAATTTGC TAAAAAATAA AACTTTGATT GACCATATTT 
GGGAAATTCT GAT
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 3512817 [Map]; Strand: c
- AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
  Distance: 0; Region: exon1 (CDS)

CGCGCGGCCT CAGATCGTTT TGTTTGGATC TTCCATTGTT CAGATGAGCT 
TTGGCCATGG TGGTTGGGGC GCCATTCTCT CCGAGGTCTA CGCTCGTAAG 
GTATCGTCAG ATTCATCAAT CTCTCTCTCT CTGTGGCTTC TGGATTCGAT 
ATTCATCCTT GGTTAGATTA CTAGAGCGTC GATTATACAA GTAGATCGCT 
TATTCTAATT ACTCTGTATT ATTTCCCCTA ACTATACATT TGTTCATTGA 
AATTCGTCTT TAGTTTTATG ATTGTAAGCG TGTATTATGC GAACCATAAT 
GTTATTTCTC CATTTGGATG TTATGTGTAT AGGCCGACAT CATTCTGCGA 
GGATATTATG GATGGAACTC TTCTCGTGCT TTGGAAGTTG TCGACCAAGT 
GTTCCCCAGG GTACTCTTTC AACTCCCTTT TTTTTCTTGC TTCATCTCAC 
TCG

5 prime edge [+] show sequence

Chromosome: 4; Position: 54153 [Map]; Strand: c
- AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -704; Region: promoter

ACCATTCGCA TTGCGCTCTC TCCTTCTCTT CATATGATCA TATAGAACGA 
AAGGTGGAAA CTTTCTTATT TTGTATGGAT CGTATACGCA ATATGGTTGG 
GCAAAACTAA TCTGTTTCAA ACAAAATACA TGAAATATCC CACAAGAAAC 
AAAGCAAACT ATAAAAAAAA TAATGCGGTA AACACGGAAA ATATCACATA 
TACGAATCCT TTTTCGGATG TGTTTTCAAT CCTTTGAATT AAATATGTCC 
ACACTCGATA TGTAAAAACA ACTTGACCCA TCACAATTAT GATCATAAAA 
TACCAACGTA CTGTTAGCCT AATGATAAAA CTCCCAAGCA GAGGTGTTTA 
GTTCGAGTTA TGTTGTAAGG GATTTTTTCT CCAAAGGAGA TAAATTTAGT 
TTGATGTGAA TTCTACATAT GGTACT

AT3G11210.1

Model type: Protein coding
Short Description: SGNH hydrolase-type esterase superfamily protein
Computational Description: SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00140.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G14740.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Computational Description: FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G14740.2

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Computational Description: FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G14740.3

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Computational Description: FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR