GT6223

CSHL Arabidopsis genetrap mutant lines

Original: GT6223

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6223

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 557478 [Map]; Strand: c
      • AT4G01340.1 - [+] show detail - CHP-rich zinc finger protein-related
        Distance: 517; Region: intergenic
      • AT4G01350.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -2781; Region: intergenic
    Flanking Genome Sequence: GT6223 - 3-prime edge 
    TATTGGAAAG ANTCTTNAGG AATTTACCGA CGGNTACCGA CCGTTTTCAT 
    CCCTAGATAA GACACAAAGT TCATAAATAC ATTGAATTAC ACAAAGAAGA 
    CAATAAAAGT TCCTATATAT TGCAAGACAA ACACTACTTG CACTCTAGCT 
    GTCGTTGCTT TGGCTTTAGC TTTATTTGCT TCACGTTTAG CCTTGTAAGG 
    TATGATACTG AAGCTTGGAG GTAATCTGTG AGAAATGTCT GCCAAATTCT 
    ACATGTTTCG GCAGAATCAT CCACAATGTG ATAAATTGTT ATGTANANTG 
    AAAACAATCT CCTTGGAAAA CTCTAAACCA TCCCTAAACC ACTTCAATCA 
    CAATTCCCNA ATTGCTGTAA TTATTTTGGG AAAACCAAGA ACACAACTTC 
    TCGAAATTTA GCATTAGTTA TAGATGAGAG CTGTAAAAGC AAATGTCCAC 
    CAAAAAAATT GATAATGTCG TGCTTCTTCT CTCTCGAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 557791 [Map]; Strand: c
      • AT4G01340.1 - [+] show detail - CHP-rich zinc finger protein-related
        Distance: 830; Region: intergenic
      • AT4G01350.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -2468; Region: intergenic
    Flanking Genome Sequence: GT6223 - 3-prime edge 
    TCTCCTTGGA AAACTCTAAA CCATCCCTAA ACCACTTCAA TCACAATTCC 
    CAAATTGCTG TAATTATATT GGGAAAACCA AGAACACAAC TTCTCGAAAT 
    TTAGCATTAG TTATAGATGA GAGCTGTAAA AGCAAATGTC CACCAAAAAA 
    ATTGATAATG TCGTGCTTCT TCTGGAATGT CCGCGGTTTA AACAAATCAA 
    ATAAGCATTC CG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 557478 [Map]; Strand: c
      • AT4G01340.1 - [+] show detail - CHP-rich zinc finger protein-related
        Distance: 517; Region: intergenic
      • AT4G01350.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -2781; Region: intergenic
    Flanking Genome Sequence: GT6223 - 3-prime edge 
    TATTGGAAAG ANTCTTNAGG AATTTACCGA CGGNTACCGA CCGTTTTCAT 
    CCCTAGATAA GACACAAAGT TCATAAATAC ATTGAATTAC ACAAAGAAGA 
    CAATAAAAGT TCCTATATAT TGCAAGACAA ACACTACTTG CACTCTAGCT 
    GTCGTTGCTT TGGCTTTAGC TTTATTTGCT TCACGTTTAG CCTTGTAAGG 
    TATGATACTG AAGCTTGGAG GTAATCTGTG AGAAATGTCT GCCAAATTCT 
    ACATGTTTCG GCAGAATCAT CCACAATGTG ATAAATTGTT ATGTANANTG 
    AAAACAATCT CCTTGGAAAA CTCTAAACCA TCCCTAAACC ACTTCAATCA 
    CAATTCCCNA ATTGCTGTAA TTATTTTGGG AAAACCAAGA ACACAACTTC 
    TCGAAATTTA GCATTAGTTA TAGATGAGAG CTGTAAAAGC AAATGTCCAC 
    CAAAAAAATT GATAATGTCG TGCTTCTTCT CTCTCGAC

AT4G01340.1

Model type
Protein coding
Short Description
CHP-rich zinc finger protein-related
Computational Description
CHP-rich zinc finger protein-related; BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01350.1); Has 195 Blast hits to 185 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01350.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR