GT6229

CSHL Arabidopsis genetrap mutant lines

Original: GT6229

Phenotypes

Morphological phenotypes

Original description

  • small or tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6229

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28597288 [Map]; Strand: c
      • AT1G76210.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: -1307; Region: intergenic
      • AT1G76220.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: 242; Region: intergenic
    Flanking Genome Sequence: GT6229 - 3-prime edge 
    ATNAATNGAA AAGGGTNGAG GTATTTGACC GACCGTTACC GACCGTTTTC 
    ATCCCTACTC ATCAGTCTCA TGATTGTATA ACTATAAACT TATGAAATAT 
    TCATAGAGTA CTGAAGTGAT CTGCTGATAA TTGTTATCTC GAACTCGTAT 
    TCTTGACAAG TAATCGTTTG AATATGATTT AAGAACGCTG CACACAAAGT 
    TTTACAAGTT CTAAAGATCA ATATGATCTG AGAGACTTTG CCTAAACTAA 
    AGCCAACAAT ACTTCACATG AACAAAATTA CATCTATACA ATCTCAAAGA 
    GTAAGCATGT TAAGAAAAGA AACTCTTGTC TTCAACAGTT TCTTATACAC 
    ACACTCCAAC TCTTTCTCTG TTTCTTCAAT CTCATGTTTC TGTTTCTCTC 
    AACTTCTTCA GCTCANCCNA ANNAAACTTC TTGATTCTTC TTATTAAAAA 
    TCCTCGACAC AATTCCTCTC CTTGATCCTT TCTTTTGATC TCTCTGATCC 
    TTCGTCACTA CCTCAATCAA CAAAGAAACC AAAACATCAA AGCTGGTCTT 
    TTCAACTCTT TTCATTACAT TAATGACATC TCCACAATCT CTCTTCCTCT 
    TCCTCATCTT CTCCTCTGTT TTCTTCCCCT GTTTGACNAA GGTTCNT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28597255 [Map]; Strand: c
      • AT1G76210.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: -1274; Region: intergenic
      • AT1G76220.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: 275; Region: intergenic
    Flanking Genome Sequence: GT6229 - 5-prime edge 
    CCTTTGCCCA TCCTGCCNTC TCCGGNCTGA TGNGTGTATC AGTTTNCTTC 
    TCACACGTCG TTGCAAAACA GAGTANGGAT GAATTTGAGA TAATGGGCTT 
    ATTAATTGAG TTTCATGGGC TTTATTTTAT GTTTGATGGG TTGTTTGCAA 
    AAAAAATAGC TAAAGAAATT ACGCAATAAT GTCTTATTTC CTGTGTGTGT 
    TTTTATAANC ACGCAATAAT GTCTNCTTCT CNCTCGACNA ANAANCACNC 
    AATAATGTCT CTACNTGATG ATGACAACAG AAAAAATATA ATGCATGGTT 
    GATTATCCGT TATAATTAGT AGCTATNCCT NCCAAACGGG AAATCGAATA 
    ATAANATTGC TGCNCTAACA ACATAATAAA AATGAAANCA TTNCACCATT 
    TGGAGTTGGA GGGATATNAA NCTAATTATA TAATTTGTGG GAAAATATTA 
    ATTTGTTGAA AATANCCTGA NATATAAANA TCTTAAACAT AAAATCTAAN 
    CCAGGATGT

AT1G76210.1

Model type
Protein coding
Short Description
Arabidopsis protein of unknown function (DUF241)
Computational Description
Arabidopsis protein of unknown function (DUF241); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT1G20520.1); Has 440 Blast hits to 428 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76220.1

Model type
Protein coding
Short Description
Arabidopsis protein of unknown function (DUF241)
Computational Description
Arabidopsis protein of unknown function (DUF241); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35690.1); Has 446 Blast hits to 436 proteins in 35 species: Archae - 3; Bacteria - 10; Metazoa - 14; Fungi - 2; Plants - 400; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR