GT6267

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6267

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 39636 [Map]; Strand: w
- AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
  Distance: 0; Region: exon1 (CDS)

TTCATCCCTA TCTCCGCCGC TCTCAAACGC CGCGGAGATG GCGTTCTGGG 
GCTTGACAAC TTCAACGATT ACTACGATCC ATCGCTCAAG AGAGCAAGGC 
AAGCCCTTTT GGAGAGAAGC GGAGTGTTTG TTGTTGAAGG AGACATCAAT 
GACGCTGCTC TCTTGAAGAA GCTCTTTGAA GTTGTTCCCT TTACCCACGT 
TATGCATTTG GCTGCTCAAG CTGGTGTCAG GTACGCCATG GAAAATCCTA 
GCTCTTATGT TCACAGTAAC ATCGCTGGCT TCGTCAATCT CCTTGAGGTT 
TGCAAATCTG CCAATCCCCA ACCCGCCATT GT

5 prime edge [+] show sequence

Chromosome: 4; Position: 39753 [Map]; Strand: w
- AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
  Distance: 0; Region: exon1 (CDS)

GGGTACCGAC GAAACCGGCG GCTCCGGTGA CGAGAACAGA GAAACCGCGG 
CGGGTACGGA GACGGGCGGA GGATCTGACC CGTTTCTCCC AAGCGGGTCC 
ACCCCAGGAG TAGGTACGAA GAGAACGGCG AGAAGGATCG GCGGGATTGG 
AGGAAACGGG AGATCGGTAG AAGAAGATGA AGATCAAACC AACGAAGACG 
AGAGACCAAA AGGCGAGCTT GGCGACGGAG GATTGCCACC GCGTACGGTG 
GAAGTAGGGC TTGAACTTGC CAGGCGTCGA AGGAATATCA TCAAGATGCG 
ACATTTGCTT CATATTTACC TCTACAGAGA GAATCTTCTT CTTCTTCTTC 
TTTGAGGTTT CTTTTTTTTC TTGGATTGGT TTTGGTTTTG GTTTGTTTGG 
TGAGAGCGTT TATAGGCTCT CCGAATAATA AGGGAAGATC ATCAAATTGA 
AAAGATTTTT GTTTCTCTAT TTTTGGGCCT

5 prime edge [+] show sequence

Chromosome: 4; Position: 39755 [Map]; Strand: w
- AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
  Distance: 0; Region: exon1 (CDS)

NTNTCCGCNA NACCGGCGGC TCCGGTGACG AGAACAGAGA AACCGCGGCG 
GGTACGGAGA CGGGCGGAGG ATCTGACCCG TTTCTCCCAA GCGGGTCCAC 
CCCAGGAGTA GGTACGAAGA GAACGGCGAG AAGGATCGGC GGGATTGGAG 
GAAACGGGAG ATCGGTAGAA GAAGATGAAG ATCAAACCAA CGAAGACGAG 
AGACCAAAAG GCGAGCTTGG CGACGGAGGA TTGCCACCGC GTACGGTGGA 
AGTAGGGCTT GAACTTGCCA GGCGTCGAAG GAATATCATC AAGATGCGAC 
ATTTGCTTCA TATTTACCTC TACAGAGAGA ATCTTCTTCT TCTTCTTCTT 
TGAGGTTTCT TTTTTTTCTT GGATTGGTTT TGGTTTTGGT TTGTTTGGTG 
AGAGCGTTTA TAGGCTCTCC GAATAATAAG GGAAGATCAT CAAATTGAAA 
AGATTTTTGT TTCTCTATTT TTGGGCCTTC TTTATTTCTT TTTCTCTCGA 
AAATGCNCCC CNCAGAGAAN AAGAAGATGG TCCNAGAGCA ANAAAAATTN 
TGAGGATTTA AGGGATANTC CAANCTTAAT TAATCNCTCT ANTCTCTATC 
TCTTACATTT AATTTTCTAC AGATTTAGTT TCNCTCTTGA TTAATTTANT 
TATTATAGGT ANATTAACTT TACTTTTATT ATTAATGAAN CTTTCNTCCT 
CCTTATGGAT CTTACTTTAG GGTCTTATGG CACAANTNTT CTTTCTCNAA 
TTATCNTTCA ATTCCNGATC CT

AT4G00110.1

Model type: Protein coding
Short Description: UDP-D-glucuronate 4-epimerase 3
Curator Summary: Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description: UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link: InterPro Scan - TAIR