GT6280

CSHL Arabidopsis genetrap mutant lines

Original: GT6280

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6280

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11425 [Map]; Strand: w
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -970; Region: promoter
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT6280 - 3-prime edge 
    ACCGACCGTT TTCATCCCTA CTCTTGGGGA TGTCTAGGAT TTTGAACCGA 
    ATTCAAGTGT GAGGCTTGAT AATATTTTTA TGCGTAAACA TGAAACAGAG 
    ACATGGAGAA TGCATATATC ATGAAGCATC AAGTATACAA TAGAGGCAAT 
    CATGGATCAA ACGGTGTTTA TGGTATCAGT AAGACAGCGG AGAATGCAAC 
    CGGGACCAAC TCTCTCTCTG AGTTTCCCCG AGCCATCAAG GCTACAAACA 
    TCTCGACTAC AAGGGCCAAT CAAATTACAT AATCACGGAA AAAACAAGGA 
    TAGATACAAG CAAACCTAAC ACTCGAGCAA TAATTTGAGT AATAGAAACA 
    AGAAACCAGA AATCGAAACG AAACGGAACG AAACACAAAA TTTCCTAATT 
    AATCTTGTGT TTAATTAAGA AAAGAAAACA CAAAAAAGTT GAA

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR