GT6343

CSHL Arabidopsis genetrap mutant lines

Original: GT6343

Phenotypes

Morphological phenotypes

Original description

  • dead or tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6343

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20417110 [Map]; Strand: c
      • AT3G55090.1 - [+] show detail - ABC-2 type transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6343 - 3-prime edge 
    ACTACCGTTT TCATCCCTAC ATTGTTGACA TTGCGATTGC GAAGAACCCT 
    AACCGCTCTT GAACTCCTTT TGGTGAATTA TCCAATCGCC AGAATACGGT 
    GGCTAAGATG AATCCGGTGA CGATTACGGT GGCTAATCGC ATTCCGAGTA 
    GCTCCGGTTG TCGTCGGGAG TTGAGGATTG AGCGTCTGGT GAGAGTTTTG 
    ATTTCGATCC AGAACGGATT CGCGAATGCA GGGACGGCTA AGGTTCCGCC 
    ACCGTGGTTT ATGGCGGAGG AACCACCGCC GCCGCCGGAG ACTAGTTTTC 
    CTCTGCTTAT GCTGGCGGAA ATCGCTTCTT TCAAGGTTAA ATTTGGGTTT 
    GGAGAAGCCG GCGGAGTTAG GGTTTGAGGA TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20416996 [Map]; Strand: c
      • AT3G55090.1 - [+] show detail - ABC-2 type transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6343 - 5-prime edge 
    ACCGACGATG CTCTTCCCGT GTTCCTCCAG GAACGTTACA TCTTCATGAG 
    AGACACAGCT TACAACGCTT ACCGGAGATC CTCCTACGTT CTCTCTCACG 
    CCATTGTTAC CTTCCCTTCG CTCATCTTCC TCTCTGTAGC TTTCGCAGTG 
    ACGACGTTTT GGGCTGTTGG GCTTGAAGGA GGTCCAATGG GCTTTTTATT 
    CTACTGCTTA ATCATCTTAG CCTCTTTCTG GTCCGGAAGC TCCTTCGTGA 
    CTTTCTTATC CGGCGTCGTT CCACATGTGA TGTTAGGCTA CACGATCGTT 
    GTTGCTATTT TAGCTTACTT CTTGCTTTTC AGTGGCTTCT TCATCAACAG 
    AGATCGAATC CCTCAGTATT GGATTTGGTT TCATTATCTT TCTCTGGTTA 
    AGTATCCATA CGAGGCGGTT CTTCAGAACG AGTTCTCGGA TCCTACAGAA 
    TGTTTTGTGA GAGGTGTTCA GCTTTTCGAC AACTCGCCTT TGGGAGA

AT3G55090.1

Model type
Protein coding
Short Description
ABC-2 type transporter family protein
Computational Description
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: sepal, root, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G39350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR