GT6352

CSHL Arabidopsis genetrap mutant lines

Original: GT6352

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6352

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 819254 [Map]; Strand: w
      • AT3G03440.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 420; Region: intergenic
      • AT3G03450.1 - [+] show detail - RGA-like 2
        Distance: 83; Region: intergenic
    Flanking Genome Sequence: GT6352 - 3-prime edge
    GGCTACCGAC CGTTTTCATC CCTAGNAAGT GAACGTGAGC GTTTCTGAAA 
    AGGCGGATCC AAAATGTACT TTCAGTTTCG AGGACTGATG TCAGCCTTTG
    TTAAAAGATT TTCTTCGAAA TATATTTTGG TACATTTTTG TTTTCGAAAC
    AGATTGTTCN TCTCNCTCGA ANAGANNNAN NNTNGTNNCC NANAANANCN
    ANAANCTCAN CANCCATGTN GCTGTNGTNG TNGTCATCAT CANCCTNCTN
    CTTATCCGCC ATNGAAGGAC CTNCTCCGGA ACNAGAANCT GGTANTGGT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 820909 [Map]; Strand: c
      • AT3G03450.1 - [+] show detail - RGA-like 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6352 - 5-prime edge
    GATTGGAGCT GAGCTGANCN ACCCGGCTTC TTCGGATCTT GACACGACCC 
    GANGTTGTGT GGATAGATCC GAATACGATC TCAGAGCAAT TCCGGGTCTT
    TCTGCGTTTC CAAAGGAAGA GGAAGTCTTT GACGAGGAAG CTAGCAGCAA
    GAGGATCCGA CTCGGATCGT GGTGCGAATC GTCGGACGAG TCAACTCGGN
    CCGTGGTGCT CGTTGACTCT CAGGAGACCG GAGTTAGACT TGTCCACGCA
    CTANTGGCGT GCGCTGAGGC NATTCACCAG GANAATCTCA NCTTAGCTGA
    CGCGCTGGTG AANCNCGTGG GAACACTCGC GGGTTCTCAA GCTGGAGCTA
    TGGGAAAAGT CNCTACGTAT TTTGCTCNAG CCTTGGCTCG TCGTATTTAC
    CGTGATTACC GGCGGAGACG GACGTTTGCG CGGCGGTGAA CCCATCTTTC
    GAAGAGGTTT TGGAGATGCN CTTTTACNAG TCTTGCCCTT ATCTGAANTC
    CNCTCATTTC CCGGCGCAAC CCCGCGATTC CTATAATNCT GTTTCCACGG
    CNCNTNAAGT TCNCCNTTCN NTCGATTTCA CGGCTTAATC NANGGGATTG
    CAAT

AT3G03440.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G12710.1); Has 4476 Blast hits to 2974 proteins in 239 species: Archae - 0; Bacteria - 8; Metazoa - 931; Fungi - 611; Plants - 2534; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03450.1

Model type
Protein coding
Short Description
RGA-like 2
Curator Summary
Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.
Computational Description
RGA-like 2 (RGL2); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like protein 3 (TAIR:AT5G17490.1); Has 2697 Blast hits to 2637 proteins in 314 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2690; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR