GT6376

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6376

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 23213792 [Map]; Strand: w
  - AT3G62740.1 - [+] show detail - beta glucosidase 7
    Distance: 0; Region: exon13 (CDS)
  - AT3G62750.1 - [+] show detail - beta glucosidase 8
    Distance: -579; Region: promoter
Flanking Genome Sequence: GT6376 - 3-prime edge
```
AATCTTGAGA AGCAACATCA ATAGTACCAT TGAGGAAACC AGTGTACCAA 
GAAGCAGAGA GCTTTGGAGA CCTCTTGCGA CC
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 23444740 [Map]; Strand: c
- AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
  Distance: -734; Region: promoter
- AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
  Distance: -734; Region: promoter
- AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
  Distance: 0; Region: exon2 (CDS)
- AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
  Distance: 0; Region: exon2 (CDS)

CTCCTNAGCG ATGGGCTTCA ACAGACTCAA CAAACCTTGT GTTGGCAGTT 
TGTTTAAGCA AAGAGATAGC AGTGTTGACA TCATACTCCT TTTTGGTTTC 
CCTTAGCTTT TGGATTTCCA AAAACCTCTT ANACCTTGTC TGTCAATGGG 
TAAGCAAACA AAGTGATGAT TCACGAGTAA AGGAAGCGAA ATTGAAGTAG 
GTAAAGCACA TACTCTATCT CTCTTGANAA CCAAAGCGGC TTTTCCTTTC 
TTAGGCTTGG GCGGATCAAG GACGGCGGTG GCGGTCTGCT CCAGGTCCTC 
CTCCGTGTCG AGGTCAGCCT CAGCGGCCAC GGCGGAGACA ATAAACTTGT 
GGTTGGAAGC TCTGTCAATA GCAGCACATC TCCGGTCCCT GGAACCCCCA 
AGGAGAANAA GCGGGACGCT CAAGTGGTTG GGTCTGGAGC TGGCAAAAGA 
AAAAAAANAT GGAGTAGGGG TAAGGTCCTG GGCACNAATG GATGCNGCGG 
CGTATGCTAA CATGAAANAA GANTGAGTAC CCCAGCANCC ATTGTTGGAG 
CTCTCTTTCT TTCTGGGTAC AAAGAAAAAA AAAAANANTG CGAGTCTCCC 
TAATCCCTCC ACCCCCAAGG GGATAACAAC ACCCCTATTC TTTCTGAACT 
ATTATTCTCT GCGTGGCCGG CACCTTAACT ACCGTGTTCC TANTGACNCT 
TNTCTTCTTA TGGAACATTA NATCTTTTAA CAACCCCCAC CCTNTCCTCC 
TGAACTCTTC NCCTNCCCCT TCCTCCTCNT CCTTCCCTTT CNCAAAAATC 
AAATTTCAAA TTTCTCCTTC CCCCCCCTAA AAAAAAACCC ACNCTGACCC 
CCCCCCCNTT TNAAAAGTTA ATTTCCAATT CCCTTCCCCC CNNCCTCCAA 
TTTCCNNTNC NACAATTCCC CCAATTTCNN TCCCCTCC

AT3G62740.1

Model type: Protein coding
Short Description: beta glucosidase 7
Computational Description: beta glucosidase 7 (BGLU7); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 8 (TAIR:AT3G62750.1); Has 11088 Blast hits to 10758 proteins in 1457 species: Archae - 142; Bacteria - 7659; Metazoa - 701; Fungi - 202; Plants - 1433; Viruses - 0; Other Eukaryotes - 951 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62750.1

Model type: Protein coding
Short Description: beta glucosidase 8
Computational Description: beta glucosidase 8 (BGLU8); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 7 (TAIR:AT3G62740.1); Has 11295 Blast hits to 10975 proteins in 1475 species: Archae - 142; Bacteria - 7812; Metazoa - 710; Fungi - 200; Plants - 1441; Viruses - 0; Other Eukaryotes - 990 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63480.1

Model type: Protein coding
Short Description: ATP binding microtubule motor family protein
Computational Description: ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63480.2

Model type: Protein coding
Short Description: ATP binding microtubule motor family protein
Computational Description: ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63490.1

Model type: Protein coding
Short Description: Ribosomal protein L1p/L10e family
Computational Description: Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63490.2

Model type: Protein coding
Short Description: Ribosomal protein L1p/L10e family
Computational Description: Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR