GT6422

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6422

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 25296545 [Map]; Strand: c
- AT5G63060.1 - [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
  Distance: 0; Region: intron1 (CDS)
- AT5G63063.1 - [+] show detail - Plant thionin family protein
  Distance: -875; Region: promoter

ANGAAGTANC GACCGTTTTC ATTTCGTAAC ATTCATCCAA TTTCCATGAT 
TCTCGCTTTT TGGCTAAAAG AGAAAAAACA AAACCTTGTG CGCATGTTGG 
GATTCAGACA CGCAACTTCG GACAGAGAAT CTGCAGTTCC GAGATCGATT 
AATGTTCAAA TTCTTCGAGC TTTTGAAATT GACTGAAGCA GCAACGATGG 
TTGAGCTGAA ACGAATCGAC ATTGACTACA AGGAGTAAAA ATTTACTCTT 
TAGAGTTTGA TTCTCAGAAA TTAGATTGAT GAGAGGAATT CGGAAGTTTC 
AAAAGCTGGG CTTTGTTCAC CACAGAGCAA GAAGAATTCA GAATTTGGAA 
TTTTGCGATT TATAGATACA GAAGCGAAAC AGAGGCATAT GTTTTTGTTT 
CCCCTTTTTA TAGACTCTTG CTTCNTCTCT CTCGA

5 prime edge [+] show sequence

Chromosome: 5; Position: 26345978 [Map]; Strand: w
- AT5G65840.1 - [+] show detail - Thioredoxin superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G65850.1 - [+] show detail - F-box and associated interaction domains-containing protein
  Distance: -336; Region: promoter

CTAAANTGGN GCGTCGACGN GGNGAATTCG ATGGTAACTG AGNCAACATG 
GGTNNCGAGC ACAGAGGNGA AATTGTGGAA CAAATAAGTG GCAATGAGCT 
CGAAGNTCGT AGANAGAGAA TCGCCATTGG TGATTCAGAA ACCAAAATCA 
TAAANTCANT TTGGCTTATG GAGAAGNCGN GAAGNATAAG NACAAGNGCA 
TCTAGAAATT AAACACGTGG CGAATAATGG ACCGAGAATG TATCCGGCGT 
CGTTTTTAGT TAAAAGCCCA TATTTATTTT GAAAGCCCAA TTCAAATCCA 
AGTCCATTAA AACAAAATTA CGAAAATTGC TTTCGATTTT CTCATCCAAA 
TTGGTTCGTC TTCCCCATAA ACTCTCAGTC TCTAGGGTTT TAACCGTCGG 
CGTATCCGCC ATGAGAACAC TGCGGAGAAA TGTTACGGAG AATCTTCTTA 
CCATCTCCCG GCGTAGAACG GAGAAGAAGA CCTCACCGAA TAAAACAGAA 
AAGTCAGTCC AGATCCCAGT TGATATCATC ATCGAGATAC TCCTGAGATT 
ACCGGCGAAA TCTATAGCGA CATGTCGTTG CGTGTCGAAC CTCTGGATCT 
CCGTAATTTG CCGTCAAGAT TTCACAGAGC TGTTCTTGAC CAGATCTTTG 
CATCGACCGC AACTCTTATT CTCCTGCATA AAAGATGGTA ACTTGTTCTT 
CTCCNCNC

AT5G63060.1

Model type: Protein coding
Short Description: Sec14p-like phosphatidylinositol transfer family protein
Computational Description: Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G08690.1); Has 1770 Blast hits to 1770 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 487; Fungi - 470; Plants - 671; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G63063.1

Model type: Protein coding
Short Description: Plant thionin family protein
Curator Summary: Encodes a Plant thionin family protein
Computational Description: Plant thionin family protein; LOCATED IN: endomembrane system; Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65840.1

Model type: Protein coding
Short Description: Thioredoxin superfamily protein
Computational Description: Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G37240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65850.1

Model type: Protein coding
Short Description: F-box and associated interaction domains-containing protein
Computational Description: F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR