GT6437

CSHL Arabidopsis genetrap mutant lines

Original: GT6437

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6437

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2967675 [Map]; Strand: w
      • AT1G09190.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6437 - 3-prime edge
    AGGAGGTTTA ATGGAAATCG AGCGTAAGCT GCTGCGTCTT CTCCACGGGC 
    ACAATACTCG AACCCGTTTA CCCGAAATC
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 581498 [Map]; Strand: w
      • AT4G01420.1 - [+] show detail - calcineurin B-like protein 5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6437 - 5-prime edge
    CCNNTATGNN ACNTACNAGA GGTTTGANAA NCAAGAANCG ANATGTCTTC 
    ATGNCTTCTT CCTTCTAATN GCTTGCTGCA AACACATCCC ATTTTACTAT
    ATCAATATAT ATTTCAAATT CCACATACAT TTAAGTGTGT CTATATATAT
    AGGCATCAAC GTAGGTGCAA GAAATTGTGG AATATAAATC TATTTCTAAC
    CGAACAAATT CGAAAGTGGA AGGGTTTGTA CATTGCCGGC TTAGGAAGCT
    GGAGACAAAT GATATAATTT ATATCGGAAT TTGATACTAG TTCTTTTTCT
    ATGAAACTTC ATTTTCTTTC CTGAGTTCTT TAATTATATT CTTTTTCTAT
    GGTTTATATT TTCTTGTTGA TTCAAATTTT TTTCTTGTTA CTTGATATTC
    AAAGCGGGAT GTCCTTGTCC ATTAGCCCAG TCCAATAATA TCCATTTCGA
    TATTGGACAA ATAGTGTCTA TGTCCACTAA GGTCCATGTC CATTAACGTT
    CATGCTTATT AAAGCTCATG TCCAAATGGG CTGTCCAATG AGCATAACAT
    AACCAAATTT TAACACAATA GTATTTACTT CATATTTCAA CCAAATTATC
    AAATTCAAAA GCAAATTTAA ACAACAAAGT ATTAAATAAT TTAAGTATTA
    AATCCAAAAG CAAATTTAAA CACAATTCAA GTATTTAACA AAGTATCAAA
    TCCAAAAACA AATTAAAAGC AAATTTAAAC TTCTTCTTCA TCTCACTC

AT1G09190.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01420.1

Model type
Protein coding
Short Description
calcineurin B-like protein 5
Curator Summary
Encodes calcineurin B-like protein 5 (CBL5). Overexpression confers tolerance to drought and salt stress.
Computational Description
calcineurin B-like protein 5 (CBL5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to water deprivation, N-terminal protein myristoylation, calcium-mediated signaling, response to osmotic stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, leaf; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G24270.2); Has 5545 Blast hits to 5527 proteins in 657 species: Archae - 0; Bacteria - 7; Metazoa - 2787; Fungi - 925; Plants - 1302; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).
Link
InterPro Scan - TAIR