GT6437

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6437

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 2967675 [Map]; Strand: w
  - AT1G09190.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT6437 - 3-prime edge
```
AGGAGGTTTA ATGGAAATCG AGCGTAAGCT GCTGCGTCTT CTCCACGGGC 
ACAATACTCG AACCCGTTTA CCCGAAATC
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 581498 [Map]; Strand: w
- AT4G01420.1 - [+] show detail - calcineurin B-like protein 5
  Distance: 0; Region: exon1 (CDS)

CCNNTATGNN ACNTACNAGA GGTTTGANAA NCAAGAANCG ANATGTCTTC 
ATGNCTTCTT CCTTCTAATN GCTTGCTGCA AACACATCCC ATTTTACTAT 
ATCAATATAT ATTTCAAATT CCACATACAT TTAAGTGTGT CTATATATAT 
AGGCATCAAC GTAGGTGCAA GAAATTGTGG AATATAAATC TATTTCTAAC 
CGAACAAATT CGAAAGTGGA AGGGTTTGTA CATTGCCGGC TTAGGAAGCT 
GGAGACAAAT GATATAATTT ATATCGGAAT TTGATACTAG TTCTTTTTCT 
ATGAAACTTC ATTTTCTTTC CTGAGTTCTT TAATTATATT CTTTTTCTAT 
GGTTTATATT TTCTTGTTGA TTCAAATTTT TTTCTTGTTA CTTGATATTC 
AAAGCGGGAT GTCCTTGTCC ATTAGCCCAG TCCAATAATA TCCATTTCGA 
TATTGGACAA ATAGTGTCTA TGTCCACTAA GGTCCATGTC CATTAACGTT 
CATGCTTATT AAAGCTCATG TCCAAATGGG CTGTCCAATG AGCATAACAT 
AACCAAATTT TAACACAATA GTATTTACTT CATATTTCAA CCAAATTATC 
AAATTCAAAA GCAAATTTAA ACAACAAAGT ATTAAATAAT TTAAGTATTA 
AATCCAAAAG CAAATTTAAA CACAATTCAA GTATTTAACA AAGTATCAAA 
TCCAAAAACA AATTAAAAGC AAATTTAAAC TTCTTCTTCA TCTCACTC

AT1G09190.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01420.1

Model type: Protein coding
Short Description: calcineurin B-like protein 5
Curator Summary: Encodes calcineurin B-like protein 5 (CBL5). Overexpression confers tolerance to drought and salt stress.
Computational Description: calcineurin B-like protein 5 (CBL5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to water deprivation, N-terminal protein myristoylation, calcium-mediated signaling, response to osmotic stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, leaf; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G24270.2); Has 5545 Blast hits to 5527 proteins in 657 species: Archae - 0; Bacteria - 7; Metazoa - 2787; Fungi - 925; Plants - 1302; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR