GT6455

CSHL Arabidopsis genetrap mutant lines

Original: GT6455

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6455

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2967750 [Map]; Strand: w
      • AT1G09190.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -32; Region: promoter
    Flanking Genome Sequence: GT6455 - 3-prime edge 
    AAGAAGGATG GCGACCGTTT TCATCCCTAC GCANNAACAA CTATAATTGA 
    AGCNNTNGNG GNAGNGNGGN GCAGNAAGNN GNTTAATGGA AATCGAGCGT 
    AAGCTGCTGC NNCTTCTCCA CGGCCACAAT ACTCGAANCC GTTTACCCGA 
    AATCCACGCC CATCTTCTGC GTCACTTNCT TCATGGTTCC AATCTCCTTC 
    NCGCCCACTT CATCTCACTC GACNAAANCG CATTNCGTAC TGTNTGTACA 
    AC

AT1G09190.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR