GT6461

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile
small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6461

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23781081 [Map]; Strand: w
  - AT5G58890.1 - [+] show detail - AGAMOUS-like 82
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT6461 - 3-prime edge
```
TTCCCTACAT CGTTGACGAA AGTCTCCACG TTGGTTTCTA TCCTGCAGCT 
GGT
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 23781343 [Map]; Strand: w
- AT5G58890.1 - [+] show detail - AGAMOUS-like 82
  Distance: 0; Region: exon1 (CDS)

ATNTCCAATT NNGCAGTATA TGNNTNCGGT TAATCATCAC ANCCATGGAC 
ACACCATTCC CGCAGAATTT AATGGACCAA CAATTCATNN CNCTCTANNA 
TCATGAGCAG CCACAGTTTC AAGGCTTCCC TAATAATTTC AATAATATGG 
GTTTCTCGTT CTTCTCTCTC GACGANG

AT5G58890.1

Model type: Protein coding
Short Description: AGAMOUS-like 82
Computational Description: AGAMOUS-like 82 (AGL82); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G55690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR