GT6471

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT6471

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 85419 [Map]; Strand: c
- AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
  Distance: -190; Region: promoter
- AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
  Distance: 0; Region: exon1 (5UTR)
- AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
  Distance: 0; Region: exon1 (5UTR)

TTTTACCGAC GGTTACCGAC CGTTTTCATC CCTAACACAG AGGGCTCGCT 
TGGCTTGTCA GTTTTCCCGC CAGTCCGATG GGCAAAGAGA CTCCGGCGGA 
GAAATCCCTA AATCTGATTC GCGGGAGACT CTGTGATCCT AGTTATGTCT 
TCAGACCTCT TTCCGCTTCG TCAGATAGCA ATTACAGGTC TGATTGCTTC 
ACTCACTTGT CGCTTAATTT CTCGAAACGA ATTTGCTTTT AACCTAATAG 
TACAAACAAA TTTGTCAACA CACAGTAAAT TGAAGTTCAT TGTATCAACC 
TCTATCACGG AGGGATGCAA CAACTCGATG TTGCTTCTCG GCCCTCGCGG 
CTCTGGCAAA GCTGCTGTAT GTCGAACCCT GCTTCCTTCT ACTCTCTATC 
TCCGTCATTG GCGTTTGATT TCTTCTTTTA TTTCAAAAAA TGGGTTGATT 
TCAGGTCTTG GATCTCGTTG T

3 prime edge [+] show sequence

Chromosome: 2; Position: 85405 [Map]; Strand: c
- AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
  Distance: -176; Region: promoter
- AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
  Distance: 0; Region: exon1 (5UTR)
- AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
  Distance: -11; Region: promoter

AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAC 
ACAGAGGGCT CGCTTGGCTT GTCAGTTTTC CCGCCAGTCC GATGGGCAAA 
GAGACTCCGG CGGAGAAATC CCTAAATCTG ATTCGCGGGA GACTCTGTGA 
TCCTAGTTAT GTCTTCAGAC CTCTTTCCGC TTCGTCAGAT AGCAATTACA 
GGTCTGATTG CTTCACTCAC TTGTCGCTTA ATTTCTCGAA ACGAATTTGC 
TTTTAACCTA ATAGTACAAA CAAATTTGTC AACACACAGT AAATTGAAGT 
TCATTGTATC AACCTCTATC ACGGAGGGAT GCAACAACTC GATGTTGCTT 
CTCGGCCCTC GCGGCTCTGG CAAAGCTGCT GTATGTCGAA CCCTGCTTCC 
TTCTACTCTC TATCTCCGTC ATTGGCGTTT GATTTCTTCT TTTATTTCAA 
AAAATGGGTT GATTTCAGGT CTTGGATCTC GTTGTAGGTG ATTTATTGGA 
GCAGTTTCCT GATTCAGTAT CAGTAGTATG TCTGATTTCT TATACATTTG 
GAACTATCTC CTATATCTAA TCTCATCGTT ATGATCTTAC TACCATCTCA 
ATGTGATTGC AGATCAGATT GAATGGACTC TTGCATAGTG ATGATAATTG 
TGCCTTTAAG GTCTAAGAGA GGGAGAGAGC CCACCATTCT CATTT

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 85335 [Map]; Strand: c
  - AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
    Distance: -106; Region: promoter
  - AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
    Distance: -66; Region: promoter
  - AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
    Distance: -81; Region: promoter
Flanking Genome Sequence: GT6471 - 5-prime edge
```
CTGTGTGAAT GTGAAGTGAA CACCCATCAT CACTACTAGT ATAAACTTAC 
TCTATGGGCC GTAATAATGG GCCTTATAAA GCAATAAAAG GCCCAATAAA 
GCTCCTTTGC TTTCTCCTAA TAACGACGTC GTTTACATTG TGTTAGCAAG 
TTTGTGATGG AAGAAGGTTT AACGGAGAAA AAAAAAG
```
5 prime edge [+] show sequence
1. Chromosome: 2; Position: 85307 [Map]; Strand: c
  - AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
    Distance: -78; Region: promoter
  - AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
    Distance: -94; Region: promoter
  - AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
    Distance: -109; Region: promoter
Flanking Genome Sequence: GT6471 - 5-prime edge
```
CATCACTACT AGTATAAACT TACTCTATGG GCCCGTAAAA ATGGGACTTA 
TAAAGCAATA AAAGGCCCAA TAAAGCTCCT TTGCTTTCTC CTAATAACGA 
CGTCGTTTAC ATTGTGTTAG CAAGTTTGTG ATGGAAGAAG GTTTAACGGA 
GAAAAAAAAA AGGATGGGGT GGTATGGAAA AATATCAAAT GGGGGCAACA 
AAACTCAACC GGAACCAATC GTTCCTTCTC TAAAGTTCTC TTTGCATTTG 
AAAATCA
```

AT2G01110.1

Model type: Protein coding
Short Description: Sec-independent periplasmic protein translocase
Curator Summary: mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description: ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01120.1

Model type: Protein coding
Short Description: origin recognition complex subunit 4
Curator Summary: Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description: origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01120.2

Model type: Protein coding
Short Description: origin recognition complex subunit 4
Curator Summary: Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description: origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link: InterPro Scan - TAIR