GT6491

CSHL Arabidopsis genetrap mutant lines

Original: GT6491

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6491

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5136105 [Map]; Strand: c
      • AT4G08140.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT6491 - 3-prime edge
    AAGAAACACT NCACTTACCG TTTTCATCNG TCCCNNGGGC CAAAGCTCTA 
    NNCATTNCAC TTTNTCNNGA NAACCANCAA GGGTACANCT GACCCTTACC
    TATAATNCAT CTAGTANTTG TTGTCTGAGT TTGATTTGTT GATTTTGCTT
    TTGATATGTG ATTATNTGAT GTCTGCTTNC GATTAGTTGA TGTCTGCNTA
    TGATTATTTG ATGTCCGGTT TTGATTATTA GTNGTCTGCT TTGGATNAGT
    TTTTTNGTNT CTCTGTTTAA ATGCNATGAN NNCTTNNANT TGANATAGCA
    TNACATTAAT ATATTAAATG CTTANAAGAA AGTATTTGTT CNCTATGGTT
    AGTTAAAATT CTAACACCNT TGATCAAT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5135963 [Map]; Strand: c
      • AT4G08140.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT6491 - 5-prime edge
    TAAGCCATAC CAATATAAGA ATTGTTAATA ACTTGAAATC AATGATGACA 
    TACCTTGAGA TTAGAATCAG CCATTGTTTC ATGAAACGCT TTAAGAGTTA
    CATACTGGGG ACGCAGAAAC TTTAGTGGTT TGGGAACTGA AGTCATTGAA
    CTTGTTGAAG CTCGGATTTC CTGCCTACAA AACCAAAAAA AAATAAAAAC
    TCCAACA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5136023 [Map]; Strand: c
      • AT4G08140.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT6491 - 5-prime edge
    CCTCTCTGCN AATNNGTGAT ATCAGAAATG TACTTCTGCA AACATAGCAA 
    ATGTAATTTN TAAGCCATAC CAATATAAGA ATTGTTAATA ACTTGAAATC
    AATGATGACA TACCTTGAGA TTAGAATCAG CCATTGTTTC ATGAAACGCT
    TTAAGAGTTA CATACTGGGG ACGCAGAAAC TTTAGTGGTT TGGGAACTGA
    AGTCATTGAA CTTGTTGAAG CTCGGATTTC CTGCCTACAA AACCAAAAAA
    AAATAAAAAC TCCAACANGG GTANAACACA AGGAGCANAA AANAAAGAAA
    AACTTTATAA TTTATGANCT TCAAANACAG TAATCTGAAA ACCCGAANCT
    AATCAATTCA AAAATTACCT CATACTCTCA ANAGCANCCT TCTGCAATTC
    CGGATTAGGA TTCTGAACCA TCTCAACATA AAGCTTANGG TTCTGCTTTA
    GTTCCAAATC CNCTTAAAAC TACAATCACA ACCCAATGTA ANTCNAGTCA
    TTAGTCCTGT GAACATATAT

AT4G08140.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S2 1A (TAIR:AT2G20580.1); Has 381 Blast hits to 381 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 132; Plants - 58; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR