GT6501

CSHL Arabidopsis genetrap mutant lines

Original: GT6501

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6501

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1707868 [Map]; Strand: c
      • AT3G05755.1 - [+] show detail - pre-tRNA
        Distance: -59; Region: promoter
      • AT3G05760.2 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G05760.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -32; Region: promoter
    Flanking Genome Sequence: GT6501 - 3-prime edge 
    GGCCNTTTCG NCCGTTACCG ACCGTTNTCA TCCCTACATA TCACCACCGT 
    CTTTATAGGG NGAGNCTCTA GTTGTTTGTT CATCGGNGNC GGNAGNAAAT 
    TCGAATCATC AGTGTTTGTT TCCTCCTCTC TTAAAGCTTA GCCCTTCTCA 
    GGTCATTGTT CTTCATCTCN CTCGNCNAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14017466 [Map]; Strand: c
      • AT2G33020.1 - [+] show detail - receptor like protein 24
        Distance: -950; Region: promoter
    Flanking Genome Sequence: GT6501 - 5-prime edge 
    AGNANTCNNC NGNCCGCNCN ACGAAAACAC GTCCATGGAT NNNTCGGTCT 
    CTGACNATAT NANTATAATG NTCCAAACTC TTGTTATTGT TATCCCANAG 
    GAGGGAAATC CNNTCTNGTT ATTNNCNTCC TTGGATTCTA NTTCCGTGTN 
    CAAGTAACTT CCNCCCCTTA AAACNAGCTT CTCNATTTNN TNTACAAACN 
    AATAGAGAAT CAGTAGGAAG GANACNACAG GGAGAACCAT ATCNACATCN 
    GANATNNGTN TCCTAATGAA TNNAATGCAT GAGAGAGAGG GACCGATACT 
    GAGACTGAAG TGTGGCGGTG ANATCATGAC GGAGCGTCTN ATACAACCAN 
    AAAAANAAAN ANTNTCCCCN GTCCNGNNTT TCCNGGGACC CACAATTAAN 
    TNTTGNANTN CGTCCNCTCC CCANTTNCAA NGGGATNNAA AACAAGTNTT 
    TNCCNCCCNA AAT

AT2G33020.1

Model type
Protein coding
Short Description
receptor like protein 24
Computational Description
receptor like protein 24 (RLP24); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 23 (TAIR:AT2G32680.1); Has 100923 Blast hits to 28307 proteins in 1116 species: Archae - 44; Bacteria - 8298; Metazoa - 20135; Fungi - 1042; Plants - 64031; Viruses - 17; Other Eukaryotes - 7356 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05755.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Pro (anticodon: CGG)
Link
InterPro Scan - TAIR

AT3G05760.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Computational Description
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); Has 718 Blast hits to 676 proteins in 204 species: Archae - 2; Bacteria - 14; Metazoa - 302; Fungi - 150; Plants - 49; Viruses - 2; Other Eukaryotes - 199 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05760.2

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Computational Description
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, double-stranded RNA binding (InterPro:IPR022755).
Link
InterPro Scan - TAIR