GT6506

CSHL Arabidopsis genetrap mutant lines

Original: GT6506

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6506

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95165 [Map]; Strand: c
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT6506 - 5-prime edge 
    AGANGTGCTN GACGTACTTG GCGCCGATTA TTTTGCTGTT GAAGTTACAT 
    TAATTAAATA TNTANNATTT CNANCNNAAC CCGTAANTAA NCNCCNGGNG 
    GTGCTTCGAT CCCTAAACTC TTAAATTGAT CAACTAACTC CTTATGTTAA 
    CGCATAATTC TAATTTGCTC CCTAAACTCT TAAATTCATC AACTAACTCC 
    TTATTTGTTT TTCTAGCAAT GACATTTTCT TTAACAATTG CTCAAGAGTT 
    CATGTTGCTT AGAGATCAAG ATTCTCTAGT GATCAAAGTT TGTATTTAAA 
    ATCGATTAAA GTAGAAAATG GTAANANATA AATTGTATAC TTGTTGCATC 
    CGGTGAAATT TTTATAAGGT CCACAAGATC CTTTCCATTT AGCCGGAGGA 
    GGTCCTANAC CATGGTCTAG GAAACTCTCT GAGTCTGGCG TTATTCCTGA 
    TTGTTGTATT ATAGGAAGGT TTAGATAAAT TATAAGAAGC ATAAATGAAT 
    AATATCGAAT CAATTTGCAT ATAGAAAAAA ATAAACCTGT NTCAAGAACA 
    CCAATAATAA CATCTCTCTC TGCTTTTANA TGTCTTTTTG CTGTCAAAGG 
    AAGTCCAACA AAATCCCAAG ATTTTGTCGT GTGAAGTTTG CGANATTGAT 
    TTCGGGATAC ACTAACAACT TCTTC

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR