GT6537

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6537

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 1; Position: 28784190 [Map]; Strand: c
- AT1G76700.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
  Distance: -942; Region: promoter

GACCGTTTTC ATCCACTATC CTTGATGCTA TTGTGGGTGG GTTATGATCT 
ACTGGACGAG GCAATGAAAA CTGCGTCCGA GTTCATACCT GAAGGCGGTT 
TTTGACAACT AATGGCCTCA AAGCCCGAAG GTAATAGATA AGGGATTGTA 
ATGAAGCTTT CTTCTCGTCT TGATCATCGC ATCAAAGCTC ATTGAGATTT 
CTTATGCCTT GGAACAAGCA ACTCTTATTA AAAAGCTTCA TATCGTGAGG 
TACTTGTAAT AATAGCTTGA GCTCTGTCCT CGCCATTGGA GAGTATATCC 
TCTGTTTCAA AAGTTCTGTA TCATAAAGTG GTTTAGTCAC TCAAATAAAT 
AATTTACCTT TTGATAAATT ATTACGAGAA ATATGACCGT TATTAAACTT 
TCTTAATAAC GTTTCAATTG TTTTACATCA AAATTGAATA AAAGGAAACA 
ACGTTAACCT

5 prime edge [+] show sequence

Chromosome: 1; Position: 28784064 [Map]; Strand: c
- AT1G76700.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
  Distance: -816; Region: promoter

GTCCTTCAAA ACAGAGAAGA AACTAATGAA ACTATCTGTT GATTCTAGAC 
CGGAACCATT CTTGAAGCAG TCCTCGTAAT TTCTTTGATT CGTAATAGCG 
CAGTGACATA ATACGGTTTC GAATTGTTTT CTCGATGGCG ATGGCAAGCT 
GGAGGCATGT ACGATAGTGC TGGTTGTATT TCCTCTGATT GCGTTCGAGC 
CATAAGTACG AATATAGTCC ATATTGTTAC TTGGAATGCA AGCCGAAGGA 
GAATGTATGT GTTCCCTGGC CCTCATATGG CTGCGAAATC AAGCAGAAGA 
GTGTCTCGTG ATACAGAGAG CGAGATTGGT GATATATTGA GCTAATGGGA 
AAGGAACAGT TAATTCATGG TGAAGGAGAA CAAGGAGCTA ACTCATGCAT 
TGGCTAGGCT ACAAAAGGAT TATGATAATG AAACCAAGAT TGACGATNAG 
TTTGTCTGCA AAGTTGGTCA GCTAAGCTAT GCCTTTGCGC AAGTTGAGCT 
C

5 prime edge [+] show sequence

Chromosome: 1; Position: 570307 [Map]; Strand: c
- AT1G02650.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon3 (CDS)

TTCCTNCCNG ANGCCGCCAT ATCTCTACGA AACACTCCTT TAACCACCAC 
ATCTAACTTG TCGTTACTCT TCCTCACAAC CGTCATTGCC ACCGCTTTAT 
TACCATCCAT CGGCGTTTCA ATCCGTCGAT TATCGATTGC AACCGCTTTG 
TCCGCTTCTA CGGTTTCAAT GTCACTCAAT ACGGCGTAAT ATCCCTTCTG 
GATCAATCTA TAGAGTAACA ATGTTGACAT TCTCGCTCGG TTCTTAACCG 
AAACTAATTC TTGCTCATCG ATTATATCGA ACCGGTCTAT AGACGTCATT 
GATCTCTCCG ATTTATATCT TAGATTCAGT AACAAGTAAG CCCTGTTCNT 
CTCNCTCGAC GAAGGG

AT1G02650.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT4G02100.1); Has 193 Blast hits to 189 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 37; Fungi - 13; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G76700.1

Model type: Protein coding
Short Description: DNAJ heat shock N-terminal domain-containing protein
Computational Description: DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G21080.1); Has 22668 Blast hits to 22554 proteins in 3188 species: Archae - 168; Bacteria - 9129; Metazoa - 3918; Fungi - 2179; Plants - 2304; Viruses - 20; Other Eukaryotes - 4950 (source: NCBI BLink).
Link: InterPro Scan - TAIR