GT6560

CSHL Arabidopsis genetrap mutant lines

Original: GT6560

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6560

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16980429 [Map]; Strand: c
      • AT4G35837.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
      • AT4G35840.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -532; Region: promoter
    Flanking Genome Sequence: GT6560 - 3-prime edge 
    AAGTNNTANC CACTTACCGA NTTCATCCCT NNTTCAGCNN CTCGCACGTA 
    ATAGCACAAT AACAAAGTCT CACCGTACCC ATTTTAGTTT GGTATAACAA 
    TAAAGTATTG CTCATATTAA GGTTCTTACT ATAAAAGGAA AGGAAGAATC 
    AAAATAAGAT TTTGAGATTT CCTCAAATAG TTAACATGTA TAGAAATTAT 
    TTCTGTTTCG TATCTAATTG TTTCTTCTGA TTGCTTGTAT GATTCGAAAA 
    TGATCGACCC TACCATATTT TGGTATTATT CAGACAATCT AAATATCTCC 
    CGTAGTTTTC TTATAATTAA AATCTAACAC ATTTTAAAAA TTTATGTAAA 
    AAATGAAGAA GTTATTTTAT TAAACTATAA ATAACCTTTT CTTTATAACT 
    CTCTGCTTCT ATCTTTCGAG CATTGAAATG AT

AT4G35837.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35840.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 8964 Blast hits to 8940 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 2132; Fungi - 649; Plants - 5031; Viruses - 28; Other Eukaryotes - 1122 (source: NCBI BLink).
Link
InterPro Scan - TAIR