GT6583

CSHL Arabidopsis genetrap mutant lines

Original: GT6583

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6583

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20504490 [Map]; Strand: c
      • AT3G55300.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT6583 - 3-prime edge 
    GTNTNGTGCG ACGTTTTCAT CCCTAGTCAG GGTATCCTTC CCACTCCCAT 
    ACTTGAGTGT ATCATCTAGT GAATCATATT GTGGTGGTAA GCCAGCCATG 
    AATTGTAGAG CCTGGTCTTC ATCACTAGTG TTGATGTCTA AACTTGCTAG 
    ATCTGCAACT AGCTTGAGAG AAGTATCCAG ATTTTCTTCA ATGCTTTTGT 
    TCTCCACCAT CTTGAAGCTT GTGAACTTGT GCTTCAAATA GATCATGTTG 
    GGTAAGGTCT TTGTCTGGTA GTTTCCTTCA TAACCTTCCT TAGAATCAGA 
    TCGCTTAGAC TCATGCTTAT CAGACTCTTA GCTATTTTAT CTTTCTCTGC 
    TTTCTTTGGA TCTACCCTAG GTTCGCATCC TTCCTCTTGA CTTCCCGGGT 
    CTGATGGTGT AGCATCTTCA ACCAAGACAG ATTCTAAGCC TAGAATCTCC 
    AACTGACATA GCATCTTATG CTTCCACAAC CCAAAGTCTC CTTTGCCATC 
    AAACTTCTCA ATATCTCAAA TCTTGCATTT GTTGGTTCCA TAGCTAGATG 
    TCTTCCTTAC AATCAAACCT GGATTGCTCT GATACCACTT GTAGAGAAAA 
    CTGAGAATAA TAATAGCTTG TNAAAGAAAC AAACACAAGA AATTTGATAA 
    CCGANTTCAC GGCTAACCGC TACGTCTCGG GGAANGACTC TTNTTTCCAA 
    GCTTCACTAT ATCAT

AT3G55300.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.5e-28 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR