GT6597

CSHL Arabidopsis genetrap mutant lines

Original: GT6597

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6597

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 832962 [Map]; Strand: w
      • AT3G03500.1 - [+] show detail - TatD related DNase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6597 - 5-prime edge 
    CTNTNCGCNG ACGGTTAGAA CAAGAACTCA CGGTGAAAAT GAAGTTGTTT 
    GATGCTCATT GTCACCTCCA AGACAAGAGG GTCATCGACA AAGCCTCGCA 
    GCTCATATCT GCTGCTTTAG CTGTCGGTGT TACCAATTTC GCAGTCAATG 
    GAACCTCCGA GGTTTGTTCC CAAATTTTCA TGATCGCTTG GTCACTGTCA 
    TCTATATTAC ACAAACGTAT ACATATTTTT AAGAGGTTTT GTTAATGGAG 
    CCAGAAAGAT TGGAACTTGG TGAAAGAGAT GGGAGAGACG TATCCTTCTG 
    TTGTTCCTTG CTTTGGACTC CATCCTTGGT ATATATGGGT TTTATGTACA 
    GACGATCCTT TTTGCAATTG ATGCACAAAA GTTTCAGATC AAAGTTTCTT 
    CTTTTTCTTC TCTCTCGAAG ANGNNN

AT3G03500.1

Model type
Protein coding
Short Description
TatD related DNase
Computational Description
TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT5G17570.1); Has 10176 Blast hits to 10176 proteins in 2674 species: Archae - 185; Bacteria - 6995; Metazoa - 308; Fungi - 266; Plants - 100; Viruses - 0; Other Eukaryotes - 2322 (source: NCBI BLink).
Link
InterPro Scan - TAIR