GT6603

CSHL Arabidopsis genetrap mutant lines

Original: GT6603

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6603

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9160060 [Map]; Strand: w
      • AT3G25150.1 - [+] show detail - Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RN...
        Distance: -157; Region: promoter
      • AT3G25150.2 - [+] show detail - Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RN...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT6603 - 5-prime edge 
    AATAAATTCT TCTTCTAATC TTCCACATGA TTACTTTAAT TAATCTTCGT 
    TGAATCTTTT GTAAAAATTT GACATTTACA AGGTTAATCA ATCTGGTGGT 
    TAAAACGTCG TTGTATATAA TCTCAGCAAT GTGTATATAG TAGCTCAAAA 
    TAGTTAAAAT GGGTAAGAAA AAAAAGCAAT TGTTTAGTGT TTAACTTTCT 
    CTAAAGATTT CTTAAACAAA AAGCAGGAAA TAGAGAAGAA GAAACAAAAC 
    AATTCTAGAT TATTTTGAGC AATGTATTTT GGTTAAAGAT GTAGTTTAAG 
    TTGAAAAATA AAACAAGCAA AATGTATTGG TTCATCTCTC T

AT3G25150.1

Model type
Protein coding
Short Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Computational Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT5G60980.2); Has 9967 Blast hits to 7037 proteins in 656 species: Archae - 4; Bacteria - 1804; Metazoa - 3861; Fungi - 1343; Plants - 1672; Viruses - 20; Other Eukaryotes - 1263 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G25150.2

Model type
Protein coding
Short Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Computational Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT5G60980.2).
Link
InterPro Scan - TAIR