GT6615

CSHL Arabidopsis genetrap mutant lines

Original: GT6615

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6615

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25599916 [Map]; Strand: c
      • AT1G68300.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
        Distance: -559; Region: promoter
      • AT1G68310.1 - [+] show detail - Protein of unknown function (DUF59)
        Distance: 0; Region: exon2 (CDS)
      • AT1G68310.2 - [+] show detail - Protein of unknown function (DUF59)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT6615 - 3-prime edge 
    NGATNNGAGT NACCGTTTTC ATCCCTACTG ATGAGCTTAC ACCAGAACCA 
    ATTGATCAAC TTGAGATTTT TGATATCCTT TCTTCATCAA GTTTTCTTAG 
    AACTACTCTA ATTGCAAACC TTANTTGGTG AATTGGTTTG ATTGTGTGTG 
    ATTGTGAGGA TGTGATTATC GTCTTACAGC TATTAGCATC TGAAATTAAG 
    AGTAGCTAGT GTATGCATAG GTTTTGGAAC AACTTGACAT GCCTCTCAGC 
    TTGAAGTTTG CTTCTTTACA CTATTAGAAG TCATGAATCT TTTGTTCTCA 
    TATGCATATC TTTTCGAAGT AGGTGTTGGA ACCATTTGAC ATGCTTCTTA 
    NCTTAAAGCC TACCTATGAA TCTTTTGTTC TCGAATGCTA AATTTCTTGT 
    AATTATGCGT GGTATCGGTT TGGTAATCTG TGAACAAATG GAATCTATGT 
    TTTAGTTGAT ACAGAATGAT ATTGGATTAT TTCTGTTGTT TTCTTTAACA 
    ATACACAAAT CATATNAGAN ATATCAAAGA TCCAGAGCAT CCTAATACTC 
    TGGAAGATCT CAGAGTAGTT ACAGAAGACT CANTTGAAGT GGATGATGAG 
    AACAGTTATG TTAGGTAAAA TGTTGGGATT GAACGTTTTG TTATGGATTT 
    TTAGTGTTCC TTTGAGCCAA TCTGTTGAGC TCTACCATTT CTTTTCAGGG 
    GTTTGCTTNC CNCCAACTGT CNAACATTGT TANCATGGCA ACCGTTATCG 
    GTCTTTGTTT CCGTTTNAAA CTTCCTACAA ANCCTTCCTT CCTCAATACA 
    AGGTACAAAN CTTCCTGNTT NTTCCNCNCC CCCC

AT1G68300.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.4); Has 7821 Blast hits to 7529 proteins in 1691 species: Archae - 688; Bacteria - 6019; Metazoa - 129; Fungi - 89; Plants - 708; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68310.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF59)
Curator Summary
Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.
Computational Description
Protein of unknown function (DUF59); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF59) (TAIR:AT3G50845.1); Has 558 Blast hits to 558 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 136; Plants - 85; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68310.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF59)
Curator Summary
Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.
Computational Description
FUNCTIONS IN: vacuolar sorting signal binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF59) (TAIR:AT3G50845.1); Has 563 Blast hits to 563 proteins in 217 species: Archae - 4; Bacteria - 0; Metazoa - 246; Fungi - 136; Plants - 85; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR