GT6625

CSHL Arabidopsis genetrap mutant lines

Original: GT6625

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6625

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3879593 [Map]; Strand: c
      • AT3G12150.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2...
        Distance: -693; Region: promoter
      • AT3G12160.1 - [+] show detail - RAB GTPase homolog A4D
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT6625 - 3-prime edge 
    CGGGGANGAT GATTCTAGTT CATCTCNCTN GANTAAGAAT TACCATCNGG 
    CGTCATCATC ATCAGCCGTT AGTGATTTCT TGCTGATTAT TCGGTAGATC 
    TCTGTTAAGA TGGTCAAAAA TGCTGTTTCA ACATTGGTAG CTTCAAGAGC 
    AGAGGTTTCC ATGAAAAACA AGTTTTCTCT TTGTGCAAAC TCTTGTGCGT 
    CTTCTGTTGG CACTGCTCTT AGGCTTCCAA GATCACATTT GTTCCCAATT 
    AGCATAATCA CTATGTTCNT CTCTCTCGAC GAA

AT3G12150.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12160.1

Model type
Protein coding
Short Description
RAB GTPase homolog A4D
Curator Summary
Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.
Computational Description
RAB GTPase homolog A4D (RABA4D); FUNCTIONS IN: GTP binding; INVOLVED IN: regulation of pollen tube growth, pollen tube growth, pollen tube development; LOCATED IN: exocytic vesicle, apical part of cell; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 28921 Blast hits to 28882 proteins in 778 species: Archae - 24; Bacteria - 155; Metazoa - 15072; Fungi - 4263; Plants - 3370; Viruses - 20; Other Eukaryotes - 6017 (source: NCBI BLink).
Link
InterPro Scan - TAIR