GT6665

CSHL Arabidopsis genetrap mutant lines

Original: GT6665

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6665

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3410737 [Map]; Strand: c
      • AT5G10790.1 - [+] show detail - ubiquitin-specific protease 22
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6665 - 5-prime edge 
    ACTGCATCTG GGTATGTCGA TTCCTTGAAG TTTGATCTTA ATCCTTGCAT 
    CGTTGATGCA TCTGAACAAG TTATTGAGGG TATTTGTAAC CATCAGTACC 
    ATATCTAAGC TTATAATCAG ATAAGTGATT GCACGGATCG GGATTTTTCA 
    GAAATGAAAT CCTCGCGGAC ATGAAAACAA AACTCTGATT CGCTTGCCAA 
    AGTAGAATAT ATGGAATCAG AAGTCACAAT GACCAACGTA GAAATATATG 
    TTTGAGATCG AAGAATCCAC CCTCTTTTTT TCTGTGATGA AAAACATAAA 
    AGAAAGAAAC TTTCGGATCA GGTTAGCGTG TGAAGAGTCA TCATCTCTCT 
    GTACGTTTTT ATCATATTTT TACTAAAAGA TCGGAGGATT ATGCAAAGGA 
    AAATTTTACA AGATTAATGG GGAAATATCT ATTTCTCTTT TTTTCTACTT 
    TCTTTTTTGG GTGTTTTTTT CTTTCCTGTA AATCTTTTAT TTCTTGCAAA 
    TCTTATAATC ATTAAAGTAA ACATTTTTGT CGTCC

AT5G10790.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 22
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 22 (UBP22); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 23 (TAIR:AT5G57990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR