GT6672

CSHL Arabidopsis genetrap mutant lines

Original: GT6672

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6672

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3328024 [Map]; Strand: w
      • AT1G10155.1 - [+] show detail - phloem protein 2-A10
        Distance: 0; Region: exon3 (CDS)
      • AT1G10160.1 - [+] show detail - transposable element gene
        Distance: -947; Region: promoter
    Flanking Genome Sequence: GT6672 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGTTTTCAG GACGCCTGCT 
    GAACTAAAGA AAGTGAGTTG GTTAGAAGTA ACCGGTTCGT ACGACAAGAT 
    AGAACCAGGC AAAACATACC GAATTGGTTT TAAAATCTCG TTCACAGCTG 
    ATGCAACCGG ATGGGACCAA GCTCCAGTTT TCATCTCTCT CGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3328141 [Map]; Strand: w
      • AT1G10155.1 - [+] show detail - phloem protein 2-A10
        Distance: 0; Region: intron2 (CDS)
      • AT1G10160.1 - [+] show detail - transposable element gene
        Distance: -830; Region: promoter
    Flanking Genome Sequence: GT6672 - 5-prime edge 
    TACTTTTAAC ATGGAAAACC AAAAACCGGT TTATTCACAA TCAAACTGAT 
    TTTTATTTTG GTTAATGTGT ATATAACGTA AGATGAAGGG TGTGTACCAA 
    CCTGTCTTCG TTAGGGATGA CCCAATACCG ACAATCACCT CCCCATATGA 
    AATTAAAACC ACTTGGCTTA AAAACCCATG CTTTTCTAAC AATCTATTAA 
    CCAAAGTTTG ATTTTTAGTT GCAAAAAAAA AATTTTAATT TTTATTTGCA 
    ATAAAATCCC CACCTTTTTT AAAATACCTT AATTAAAAAA CCTATTACCA 
    ATTAACTTTT TATTACTTCT TTTCCCATTT TGGATTCTCC CCCTTATTAA 
    AAACTCTTAA CACCTTTTTG GACAAACATT CCCCCCTTCC TCC

AT1G10155.1

Model type
Protein coding
Short Description
phloem protein 2-A10
Computational Description
phloem protein 2-A10 (PP2-A10); BEST Arabidopsis thaliana protein match is: phloem protein 2-A9 (TAIR:AT1G31200.1); Has 113 Blast hits to 113 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10160.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR