GT6676

CSHL Arabidopsis genetrap mutant lines

Original: GT6676

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6676

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10125519 [Map]; Strand: c
      • AT2G23780.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -883; Region: promoter
      • AT2G23790.1 - [+] show detail - Protein of unknown function (DUF607)
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT6676 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC GTGGCTGATG TTACATAAGC 
    CGCAATAATA AGAACAACCT CTTTGTCTTT TTTTAGAAAA CTGAAAAATT 
    TGAGAATAGT ACCCATTCGT TTTTTTCTTA CTTTTTTTTG GGGTAAAATT 
    CTCTATTTAG GTAAAATCAA ACACCATTTG TGACAACAAC ATTAAATCTA 
    AGCAATTTTT CCCCTAATCA AAATTTTAAC TCTTGATAGC TCCAAAAATC 
    TTGGAAACAT GATCCGAAGG CTTAAAGCAA AACAGCTTCT TCAGTTCATT 
    ATACCTCTCC AAATAAAACT CATACTCATT CATCAACTTT CTCTGTTTCG 
    CCTCAAACCT GCTTTGGTAA AACCCTTCAA AAAAAGGCTC TTTCAATTTC 
    CTGAGGAAAA A

AT2G23780.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19310.1); Has 3846 Blast hits to 3838 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2175; Fungi - 493; Plants - 714; Viruses - 21; Other Eukaryotes - 443 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23790.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF607)
Computational Description
Protein of unknown function (DUF607); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF607) (TAIR:AT4G36820.1); Has 364 Blast hits to 364 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 45; Plants - 131; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR